View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_high_30 (Length: 260)
Name: NF10151_high_30
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_30 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 44879548 - 44879375
Alignment:
| Q |
7 |
cctatgagttgttctccataagctatgtacagggtgacgcaaagttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattg |
106 |
Q |
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| T |
44879548 |
cctatgagttgttctccataagctatgtacagggtgacacaaagttcttaaagaatattgcatgctttgta----gcttgcaaacaaattcataagattt |
44879453 |
T |
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| Q |
107 |
gagatttgagagataatcttgttccttctgtagtcgttgaagcagcagacgtggaggaatttgatatgccttccgttc |
184 |
Q |
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| T |
44879452 |
gagatttgagagataatcttgttccttctgtagtcgttgaagcagcagacgcggaggaatttggtatgcctttcgttc |
44879375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 44878820 - 44878952
Alignment:
| Q |
31 |
atgtacagggtgacgcaaagttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattggagatttgagagataatcttgttc |
130 |
Q |
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| T |
44878820 |
atgtacagggtgacacaaagttcttaaagaatattgcatactttgta----gcatgcaaacaacttcataagattggagctttgacatataatcttgttc |
44878915 |
T |
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| Q |
131 |
cttctgtagtcgttgaagcagcagacgtggaggaatt |
167 |
Q |
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| T |
44878916 |
cttctatcgtcgttgaagaaacagacgtggaggaatt |
44878952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 44879341 - 44879303
Alignment:
| Q |
217 |
caaattacttgaatataattctatttaccctatgctact |
255 |
Q |
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| T |
44879341 |
caaattacttgaatataattctatttaccgtatgttact |
44879303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 329 - 204
Alignment:
| Q |
8 |
ctatgagttgttctccataagctatgtacagggtgacgcaaagttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattgg |
107 |
Q |
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| T |
329 |
ctatgagttgttctccataagctatgtacaggctgacacaaagttcttaaagaatattgcatgcttt----gtagcttgcaaacaaattcataagattgg |
234 |
T |
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| Q |
108 |
agatttgagagataatcttgttccttctgt |
137 |
Q |
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| T |
233 |
aggtttgagagataatcttgttccttctgt |
204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 29677568 - 29677702
Alignment:
| Q |
31 |
atgtacagggtgacgcaaagttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattggagatttgagagataatcttgttc |
130 |
Q |
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| T |
29677568 |
atgtacatggtgactcaaagttcttaaaaaatatcgcatgtcttgaa----gcatgcaaaaaacttcatatgattggagctttgacagataatcttgttc |
29677663 |
T |
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| Q |
131 |
cttctgtagtcgttgaagcagcagacgtggaggaatttg |
169 |
Q |
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| T |
29677664 |
cttctatagttgctgaagaagcagaggtggaggactttg |
29677702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 11491825 - 11491713
Alignment:
| Q |
51 |
ttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattggagatttgagagataatcttgttccttctgtagtcgttgaagca |
150 |
Q |
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| T |
11491825 |
ttcttaaagaatattgcatgccttgaa----gcatgcaaacaactacataagattggagcgttgacagataatctcgttccttctattgttgttgaagaa |
11491730 |
T |
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| Q |
151 |
gcagacgtggaggaatt |
167 |
Q |
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| T |
11491729 |
gcagaggtggaggaatt |
11491713 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 26458772 - 26458906
Alignment:
| Q |
31 |
atgtacagggtgacgcaaagttcttaaagaatattgcatgctttgtacgtagcttgcaaacaaattcataagattggagatttgagagataatcttgttc |
130 |
Q |
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| T |
26458772 |
atgtacatggtgaatcaaagtacttaaaaaatattgcatgtcttgaa----gcatgcaaacgacttcatatgattggagctttgacagataatctcgttc |
26458867 |
T |
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| Q |
131 |
cttctgtagtcgttgaagcagcagacgtggaggaatttg |
169 |
Q |
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| T |
26458868 |
cttctatagtcgttgaaaaagcagaggtggaggactttg |
26458906 |
T |
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