View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_high_39 (Length: 240)

Name: NF10151_high_39
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_high_39
NF10151_high_39
[»] chr4 (18 HSPs)
chr4 (12-64)||(42866053-42866105)
chr4 (10-67)||(2996555-2996612)
chr4 (26-74)||(47119012-47119060)
chr4 (10-57)||(8468940-8468987)
chr4 (10-77)||(17884040-17884107)
chr4 (10-57)||(18630672-18630719)
chr4 (10-77)||(56480320-56480387)
chr4 (10-56)||(35507356-35507402)
chr4 (10-56)||(35507488-35507534)
chr4 (12-49)||(11264301-11264338)
chr4 (15-56)||(16494841-16494882)
chr4 (12-77)||(24929465-24929530)
chr4 (12-57)||(30207604-30207649)
chr4 (18-67)||(35517172-35517221)
chr4 (130-162)||(2726411-2726443)
chr4 (14-77)||(7368090-7368154)
chr4 (130-162)||(41162203-41162235)
chr4 (26-70)||(49202624-49202668)
[»] chr6 (13 HSPs)
chr6 (10-77)||(4006686-4006753)
chr6 (18-57)||(2727895-2727934)
chr6 (16-57)||(281885-281926)
chr6 (13-77)||(2112173-2112236)
chr6 (13-57)||(2117395-2117439)
chr6 (10-62)||(8183132-8183184)
chr6 (10-74)||(31671105-31671169)
chr6 (10-56)||(31812044-31812090)
chr6 (10-47)||(13907420-13907457)
chr6 (12-65)||(30523921-30523974)
chr6 (12-56)||(1401102-1401146)
chr6 (29-77)||(7485118-7485166)
chr6 (130-162)||(9041567-9041599)
[»] chr5 (11 HSPs)
chr5 (10-65)||(18543227-18543282)
chr5 (12-57)||(15003547-15003592)
chr5 (98-162)||(26516186-26516251)
chr5 (12-67)||(12975329-12975384)
chr5 (10-57)||(34117567-34117614)
chr5 (10-56)||(2568651-2568697)
chr5 (26-67)||(34205221-34205262)
chr5 (12-57)||(37588393-37588438)
chr5 (12-49)||(40534199-40534236)
chr5 (130-162)||(14257353-14257385)
chr5 (12-64)||(16889720-16889772)
[»] chr1 (22 HSPs)
chr1 (10-57)||(25479573-25479620)
chr1 (10-77)||(49888739-49888806)
chr1 (13-57)||(25005831-25005875)
chr1 (10-77)||(7218105-7218172)
chr1 (14-77)||(17269222-17269285)
chr1 (10-57)||(37241853-37241900)
chr1 (12-57)||(23902100-23902145)
chr1 (13-77)||(25006068-25006132)
chr1 (14-56)||(5421955-5421997)
chr1 (7-77)||(27738208-27738278)
chr1 (10-56)||(29793775-29793821)
chr1 (14-52)||(35351036-35351074)
chr1 (12-46)||(50319273-50319307)
chr1 (12-49)||(5924055-5924092)
chr1 (24-77)||(9656622-9656675)
chr1 (12-57)||(33976678-33976723)
chr1 (13-58)||(42556665-42556710)
chr1 (13-57)||(6659506-6659550)
chr1 (98-162)||(18011793-18011857)
chr1 (26-74)||(27976570-27976618)
chr1 (19-67)||(33185997-33186045)
chr1 (12-48)||(47598454-47598490)
[»] chr8 (25 HSPs)
chr8 (13-77)||(6509337-6509401)
chr8 (18-77)||(34770864-34770923)
chr8 (10-56)||(31862486-31862532)
chr8 (12-77)||(4558770-4558835)
chr8 (10-47)||(26473783-26473820)
chr8 (10-58)||(10075582-10075630)
chr8 (10-54)||(43709268-43709312)
chr8 (98-160)||(12972746-12972809)
chr8 (10-73)||(27028807-27028870)
chr8 (12-55)||(29973075-29973118)
chr8 (12-67)||(30627935-30627990)
chr8 (132-162)||(40888453-40888483)
chr8 (10-67)||(8062506-8062563)
chr8 (26-67)||(9834836-9834877)
chr8 (102-162)||(31884482-31884543)
chr8 (12-52)||(2342403-2342443)
chr8 (130-162)||(7008517-7008549)
chr8 (12-56)||(8062322-8062366)
chr8 (130-162)||(8194088-8194120)
chr8 (18-78)||(11415125-11415185)
chr8 (12-56)||(29592206-29592250)
chr8 (24-64)||(30013203-30013243)
chr8 (10-58)||(30389090-30389138)
chr8 (13-53)||(39551243-39551283)
chr8 (130-162)||(39866886-39866918)
[»] chr7 (20 HSPs)
chr7 (13-57)||(28340878-28340922)
chr7 (130-162)||(28702645-28702677)
chr7 (13-56)||(3610774-3610817)
chr7 (10-57)||(21453286-21453333)
chr7 (12-67)||(38010696-38010751)
chr7 (10-77)||(40689017-40689084)
chr7 (26-85)||(44151527-44151586)
chr7 (10-56)||(46104598-46104644)
chr7 (130-162)||(2221853-2221885)
chr7 (98-162)||(2223037-2223101)
chr7 (12-56)||(2825264-2825308)
chr7 (130-166)||(3501115-3501151)
chr7 (13-57)||(25507341-25507385)
chr7 (13-57)||(25558225-25558269)
chr7 (13-57)||(25558423-25558467)
chr7 (12-64)||(27481327-27481379)
chr7 (130-162)||(37497910-37497942)
chr7 (10-66)||(40530440-40530496)
chr7 (13-53)||(45020181-45020221)
chr7 (98-161)||(49060429-49060493)
[»] chr3 (21 HSPs)
chr3 (13-77)||(36646416-36646480)
chr3 (14-47)||(6801855-6801888)
chr3 (12-64)||(23249543-23249595)
chr3 (13-77)||(31337435-31337499)
chr3 (13-57)||(43875640-43875684)
chr3 (14-57)||(11253494-11253536)
chr3 (131-162)||(20874451-20874482)
chr3 (10-77)||(44061054-44061121)
chr3 (19-57)||(22214699-22214737)
chr3 (12-57)||(14548754-14548799)
chr3 (24-57)||(21872316-21872349)
chr3 (12-57)||(24887316-24887361)
chr3 (12-77)||(30956659-30956724)
chr3 (12-77)||(30972471-30972536)
chr3 (19-64)||(40880988-40881033)
chr3 (13-77)||(1816555-1816619)
chr3 (130-162)||(4534491-4534523)
chr3 (13-77)||(10101510-10101574)
chr3 (13-77)||(10212435-10212499)
chr3 (10-58)||(29113453-29113501)
chr3 (17-57)||(42753598-42753638)
[»] chr2 (19 HSPs)
chr2 (10-57)||(39983334-39983381)
chr2 (10-50)||(10884552-10884592)
chr2 (12-67)||(29935985-29936041)
chr2 (10-57)||(938541-938588)
chr2 (10-57)||(6993755-6993802)
chr2 (26-77)||(11513870-11513921)
chr2 (26-77)||(18066100-18066151)
chr2 (12-67)||(22681218-22681273)
chr2 (24-67)||(43141853-43141896)
chr2 (10-56)||(9477945-9477991)
chr2 (10-52)||(13736324-13736366)
chr2 (7-64)||(10143157-10143214)
chr2 (10-58)||(29510583-29510631)
chr2 (10-54)||(33942145-33942189)
chr2 (13-49)||(34649322-34649358)
chr2 (25-57)||(34926956-34926988)
chr2 (10-58)||(36863656-36863704)
chr2 (130-162)||(43456835-43456867)
chr2 (130-162)||(43635250-43635282)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-46)||(306329-306363)
[»] scaffold0590 (1 HSPs)
scaffold0590 (98-162)||(1191-1256)
[»] scaffold0275 (1 HSPs)
scaffold0275 (98-162)||(2719-2784)
[»] scaffold0092 (1 HSPs)
scaffold0092 (10-63)||(40217-40270)
[»] scaffold0085 (1 HSPs)
scaffold0085 (103-162)||(26163-26223)


Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 42866105 - 42866053
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  42866105 cataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaaca 42866053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 2996612 - 2996555
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    |||||| |||||| | ||||||||||||| |||||||||| |||||||| ||||||||    
T  2996612 ttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaatt 2996555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 47119012 - 47119060
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaacttt 74  Q
    |||||| |||||||||||||||||||||||||  |||||||| ||||||    
T  47119012 gatagcatatgaatacaacttatagcttatatgaaaacaatttaacttt 47119060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 8468987 - 8468940
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||||||| ||| |||||||| |||||| |||||||||||    
T  8468987 ttcataagctctctagaataacttatgaaaacaactaatagcttatat 8468940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 17884107 - 17884040
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||| |  |||||||||||| |||||| ||| |||||| | |||||||| |||||||||    
T  17884107 ttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttatt 17884040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 18630719 - 18630672
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||| | ||||||||| |||| ||||||||||||||||||    
T  18630719 ttcataagctctgttggatagcttgtgaaaacaacttatagcttatat 18630672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 56480387 - 56480320
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||| | ||||| ||||||| ||| |||||| |||||| | |||||||| |||||||||    
T  56480387 ttcataagctctccaagatagtttatgaaaacagcttataacttatacataaacaatttaactttatt 56480320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 35507356 - 35507402
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||||||| ||||||||  |||||| |||||||||||||||||    
T  35507356 ttcataagctctttaggatagtgtatgaaaacaacttatagcttata 35507402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 35507488 - 35507534
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||||||| ||||||||  |||||| |||||||||||||||||    
T  35507488 ttcataagctctttaggatagtgtatgaaaacaacttatagcttata 35507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 11264338 - 11264301
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttata 49  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  11264338 cataagctctctaggatggcttatgaaaacaacttata 11264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 16494841 - 16494882
Alignment:
Q  15 aagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  16494841 aagctctccaagatagcttatgaaaacaacttatagcttata 16494882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 24929530 - 24929465
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||||||| | || ||||||| |||||||||||||| |||  ||||| ||| ||||||||    
T  24929530 cataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagactttatt 24929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 30207604 - 30207649
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||    
T  30207604 cataatctctctaaggtagcttatgaaaacaacttatagcttatat 30207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 35517172 - 35517221
Alignment:
Q  18 ctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||| ||||||||||||||| ||| ||| ||||||||||| ||||||||    
T  35517172 ctctccaggatagcttatgaaaacatcttctagcttatataaaaacaatt 35517221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 2726411 - 2726443
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||||||| ||||||||||||||||||    
T  2726411 cttatgctataagttcttaattaagttgtttat 2726443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 7368090 - 7368154
Alignment:
Q  14 taagctctctaggatagcttatgaatacaacttat-agcttatatagaaacaattaaactttatt 77  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||  ||||||||  ||||||||    
T  7368090 taagctctctagaatagcttatggaaacaacttataagcttatatgaaaacaatttgactttatt 7368154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 41162203 - 41162235
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    |||||| ||||||||||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttat 41162235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 49202668 - 49202624
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaa 70  Q
    ||||||||| ||| |||||||||||||||||  ||||||||||||    
T  49202668 gatagcttacgaaaacaacttatagcttataccgaaacaattaaa 49202624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 4006753 - 4006686
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||| |||||  |||||||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  4006753 ttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttatt 4006686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 2727895 - 2727934
Alignment:
Q  18 ctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2727895 ctctctaggatagcttatgaaaacaacttatagcttatat 2727934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 281885 - 281926
Alignment:
Q  16 agctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  281885 agctctctaggatagcttatgaacacagcttatagcttatat 281926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 2112236 - 2112173
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||| ||||| ||||| ||||||| ||||||||||| |||||| ||||||||| |||||||||    
T  2112236 ataagcactctaagatagtttatgaaaacaacttatagtttatat-gaaacaatttaactttatt 2112173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 2117439 - 2117395
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||    
T  2117439 ataagctctctaggataacttatgaaaacaacttatagattatat 2117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 8183184 - 8183132
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaa 62  Q
    |||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||    
T  8183184 ttcataagctttctagaatagcttgtgaaaacaacttataccttatatagaaa 8183132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 31671105 - 31671169
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaacttt 74  Q
    |||||||||| |||||||||| ||| ||| ||| ||||||||||||||  |||||||| ||||||    
T  31671105 ttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaaacaatttaacttt 31671169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 31812044 - 31812090
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||||||||| | ||||||||||||| |||||||||| ||||||    
T  31812044 ttcataagctctccaagatagcttatgaaaacaacttatatcttata 31812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 13907457 - 13907420
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaactta 47  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  13907457 ttcataagctctttaggatagcttatgaaaacaactta 13907420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 30523974 - 30523921
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaa 65  Q
    |||||||||| |||||||||||||||||| | | ||||||||||| | ||||||    
T  30523974 cataagctctttaggatagcttatgaatataccatatagcttatacaaaaacaa 30523921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1401146 - 1401102
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||    
T  1401146 cataagctctccatgatagcttatgaaaacagcttatagcttata 1401102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 7485118 - 7485166
Alignment:
Q  29 agcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||| ||||||||||||||||||  ||| |||| |||||||||    
T  7485118 agcttatgaaaacaacttatagcttatatgaaaaaaatttaactttatt 7485166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 9041567 - 9041599
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||| |||||||||||||||||||    
T  9041567 cttatgctataagcgcttaattaagttgtttat 9041599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 18543227 - 18543282
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaa 65  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||    
T  18543227 ttcataagctctccaggatagcttatgaaaacaacttatatcttatataaaaacaa 18543282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 15003547 - 15003592
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  15003547 cataagctctcttggatagcttatgaaaaccacttatagcttatat 15003592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 26516251 - 26516186
Alignment:
Q  98 atagcttatacatataaacttataggataa-ctcttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||   ||||||| ||||| | ||||||||||||| |||||||||||||||||||    
T  26516251 atagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttat 26516186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 12975384 - 12975329
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||| | ||||||||||||| ||| ||||||||||||||  ||||||||    
T  12975384 cataagctctccaagatagcttatgaacacagcttatagcttatatgaaaacaatt 12975329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 34117567 - 34117614
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||| | |||||||||||||  |||||||||||||||||    
T  34117567 ttcataagctctccaagatagcttatgaaagcaacttatagcttatat 34117614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 2568697 - 2568651
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||| ||||||| | ||||||||||||| |||||||||||||||||    
T  2568697 ttcattagctctccatgatagcttatgaaaacaacttatagcttata 2568651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 34205262 - 34205221
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||    
T  34205262 gatagcttatgaaaacaacttatagcttatataaaaataatt 34205221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 37588393 - 37588438
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||| || ||| |||||||| ||||||||||||||||||    
T  37588393 cataagctctccagaataacttatgaaaacaacttatagcttatat 37588438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 40534236 - 40534199
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttata 49  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  40534236 cataagctctctgggatagcttatgaaaacaacttata 40534199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 14257385 - 14257353
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    |||||| ||||||||||||||||||||||||||    
T  14257385 cttatgttataagtgcttaattaagttgtttat 14257353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16889772 - 16889720
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    ||||| |||||||| |||||||||||| ||| |||||||||| |||| |||||    
T  16889772 cataaactctctagcatagcttatgaaaacagcttatagcttctataaaaaca 16889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25479620 - 25479573
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  25479620 ttcataagctctctaggatagcttatgaaaacaacttatagcctatat 25479573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 49888806 - 49888739
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||| |||||| ||||||||||||| |||||| ||||||||||   ||||||||||||||||||    
T  49888806 ttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaaacaattaaactttatt 49888739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 25005831 - 25005875
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  25005831 ataagctctccaggatagcttatgaaaacaacttatagcttatat 25005875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 7218105 - 7218172
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||| |||| ||||||| ||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  7218105 ttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 7218172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 17269285 - 17269222
Alignment:
Q  14 taagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||  ||||||||  ||||||||    
T  17269285 taagctctccaggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttatt 17269222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37241853 - 37241900
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  37241853 ttcataagctctctaggatatcttatgaaaacaacttctagcttatat 37241900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 23902100 - 23902145
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23902100 cataagctctctaagatagcttttgaaaacaacttatagcttatat 23902145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 25006068 - 25006132
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||| |||| | ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  25006068 ataagatctccaagatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 25006132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 5421955 - 5421997
Alignment:
Q  14 taagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||||||| |||||||||| || |||||||||||||||||    
T  5421955 taagctctctaagatagcttatcaaaacaacttatagcttata 5421997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 27738208 - 27738278
Alignment:
Q  7 atattcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||| |||||||||||  | |||||||||||| |||| |||||||||||||  ||||||||  ||||||||    
T  27738208 atatccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaacaatttgactttatt 27738278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 29793821 - 29793775
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||||||||| | |||||||||||||  ||||||||||||||||    
T  29793821 ttcataagctctcgaagatagcttatgaactcaacttatagcttata 29793775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 35351074 - 35351036
Alignment:
Q  14 taagctctctaggatagcttatgaatacaacttatagct 52  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  35351074 taagctctctaggatagtttatgaagacaacttatagct 35351036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 50319307 - 50319273
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaactt 46  Q
    ||||||||||||||||||||||||||| |||||||    
T  50319307 cataagctctctaggatagcttatgaaaacaactt 50319273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 5924092 - 5924055
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttata 49  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  5924092 cataagctctctaggataacttatgaaaacaacttata 5924055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 9656675 - 9656622
Alignment:
Q  24 aggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||||| ||| ||||||||||||||  ||| |||| |||||||||    
T  9656675 aggatagcttatgaacacagcttatagcttatatgaaaataatttaactttatt 9656622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 33976723 - 33976678
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||||| ||| ||| |||||||||| |||||||    
T  33976723 cataagctctctaggataggttaagaaaacaacttataacttatat 33976678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 42556665 - 42556710
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||    
T  42556665 ataaactctccatgatagcttatgaaaacaacttatagcttatata 42556710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 6659550 - 6659506
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||| || ||||||||||| ||| ||||||||||||||    
T  6659550 ataagctctcttggttagcttatgaaaacatcttatagcttatat 6659506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 18011857 - 18011793
Alignment:
Q  98 atagcttatacatataaacttataggataactcttatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||| ||||  ||||||| |||||  |||||  |||||||||||||||||||| |||||    
T  18011857 atagcttatagatatgcacttatatgataatgcttatattataagtgcttaattaagttatttat 18011793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 27976618 - 27976570
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaacttt 74  Q
    ||||||||||||| |||||||||||| |||| | |||||||| ||||||    
T  27976618 gatagcttatgaaaacaacttatagcatatacaaaaacaatttaacttt 27976570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 33185997 - 33186045
Alignment:
Q  19 tctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||||||||| || |||||||||| ||| |||| ||||||||    
T  33185997 tctctaggatagcttataaaaacaacttataacttgtataaaaacaatt 33186045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 47598454 - 47598490
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttat 48  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  47598454 cataagctctccaggatagcttatgaaaacaacttat 47598490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 6509337 - 6509401
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||| | ||||||  ||||||||    
T  6509337 ataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttatt 6509401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 34770923 - 34770864
Alignment:
Q  18 ctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||||||||  ||||||||    
T  34770923 ctctctaggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttatt 34770864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 31862532 - 31862486
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||    
T  31862532 ttcataagctctctaggataacttatgaaaacatcttatagcttata 31862486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 4558835 - 4558770
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||||||||||||||| | ||| |||||||| |||||  ||| |||| |||||||||    
T  4558835 cataagctctctaggatagcttatggaaacagcttatagcatatatgaaaataatttaactttatt 4558770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 26473783 - 26473820
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaactta 47  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  26473783 ttcataagctctctaggatagcttatgaaaacaactta 26473820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10075582 - 10075630
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    ||||||||||||||||||||||||||||| | | |||||| ||||||||    
T  10075582 ttcataagctctctaggatagcttatgaaaatagcttataacttatata 10075630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 43709312 - 43709268
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagctta 54  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||    
T  43709312 ttcataagctctccaggatagctcatgaaaacaacttatagctta 43709268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 12972809 - 12972746
Alignment:
Q  98 atagcttatacatataaacttataggataact-cttatgctataagtgcttaattaagttgttt 160  Q
    ||||||||||||||   ||||||| ||||| | ||||||||||||| |||||||||||||||||    
T  12972809 atagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 27028870 - 27028807
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactt 73  Q
    ||||||||||||| | ||||||||||||| ||| |||||||| |||| | |||||||| |||||    
T  27028870 ttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaatttaactt 27028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 29973118 - 29973075
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttat 55  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  29973118 cataaactctcaaggatagcttatgaaaacaacttatagcttat 29973075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 30627935 - 30627990
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| | | ||||||||    
T  30627935 cataagctctctaagataacttatgaaaacaacttatagcttacacataaacaatt 30627990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Complemental strand, 40888483 - 40888453
Alignment:
Q  132 tatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||||||||||||||||||||||||    
T  40888483 tatgctataagtgcttaattaagttgtttat 40888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 8062563 - 8062506
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||| ||||||| ||||||||||||  ||| ||||||||||||||  ||||||||    
T  8062563 ttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaacaatt 8062506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 9834836 - 9834877
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  9834836 gatagcttatgaaaacaacttatagcttatatgaaaacaatt 9834877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 31884543 - 31884482
Alignment:
Q  102 cttatacatataaacttataggataa-ctcttatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||||  |||| || ||||| | |||||||||||||||||||||| ||||||||||    
T  31884543 cttatacatatgcacttgtatgataagcgcttatgctataagtgcttaattgagttgtttat 31884482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 2342403 - 2342443
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagct 52  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  2342403 cataagctttcgaggatagcttatgaaaacaacttatagct 2342443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 7008549 - 7008517
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||| |||||||||||||||||||    
T  7008549 cttatgctataagcgcttaattaagttgtttat 7008517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8062366 - 8062322
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||| ||||||| ||||||||||||| ||| |||||||||||||    
T  8062366 cataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 8194088 - 8194120
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||| |||||||||||||||||||    
T  8194088 cttatgctataagggcttaattaagttgtttat 8194120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 11415185 - 11415125
Alignment:
Q  18 ctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttattc 78  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||| ||||  |||||||||    
T  11415185 ctctctaggatagcttatgaaaacagcgtataacttatataaaaataatttgactttattc 11415125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29592206 - 29592250
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||||||| |||||||||||||| |||  ||||||||||||    
T  29592206 cataagctctctgggatagcttatgaaaacagattatagcttata 29592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 30013243 - 30013203
Alignment:
Q  24 aggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    ||||||||||||||| ||| |||||||||||||| ||||||    
T  30013243 aggatagcttatgaaaacagcttatagcttatatggaaaca 30013203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 30389138 - 30389090
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    |||||||| ||||||||| |||||||||| ||| | |||||||||||||    
T  30389138 ttcataagttctctaggaaagcttatgaaaacagcgtatagcttatata 30389090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 39551243 - 39551283
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagctt 53  Q
    |||||||||| |||| |||||||||| ||||||||||||||    
T  39551243 ataagctctccaggaaagcttatgaaaacaacttatagctt 39551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 39866886 - 39866918
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||| |||||||||||||||||||||    
T  39866886 cttatgctataggtgcttaattaagttgtttat 39866918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 28340878 - 28340922
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  28340878 ataagctctctaggatagcttatgaaaacagcttatagcttatat 28340922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 28702677 - 28702645
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||||||||||||||||||||||||||    
T  28702677 cttatgctataagtgcttaattaagttgtttat 28702645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 3610774 - 3610817
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||    
T  3610774 ataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 21453333 - 21453286
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||| ||||||||||||||||||||||| |||  |||||||||||||    
T  21453333 ttcattagctctctaggatagcttatgaaaacagtttatagcttatat 21453286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 38010751 - 38010696
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    |||||| |||||||||||| ||||||| ||| ||||||||||||||  ||||||||    
T  38010751 cataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatt 38010696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 40689017 - 40689084
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||| | || ||||||||||||||| ||| ||||||||||||||  ||| |||| |||||||||    
T  40689017 ttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttatt 40689084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 44151527 - 44151586
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaactttattccatcttt 85  Q
    ||||| ||||||| |||||||||||||||||| |||||| ||  ||||||||| ||||||    
T  44151527 gatagtttatgaaaacaacttatagcttatatggaaacagttttactttattctatcttt 44151586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 46104598 - 46104644
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||||||||  || |||||||||||| |||||||||||||||||    
T  46104598 ttcataagctcttcagcatagcttatgaaaacaacttatagcttata 46104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 2221885 - 2221853
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||| |||||||||||||||||    
T  2221885 cttatgctataagtgtttaattaagttgtttat 2221853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 2223101 - 2223037
Alignment:
Q  98 atagcttatacatataaacttataggataactcttatgctataagtgcttaattaagttgtttat 162  Q
    |||||||||||||| | ||||||| |||||   ||||||||||| ||| ||||||| ||||||||    
T  2223101 atagcttatacataaacacttatacgataagatttatgctataaatgcctaattaaattgtttat 2223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 2825264 - 2825308
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||    
T  2825264 cataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 3501115 - 3501151
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttatattc 166  Q
    |||||| |||||||| |||||||||||||||||||||    
T  3501115 cttatgttataagtgtttaattaagttgtttatattc 3501151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 25507385 - 25507341
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||| ||||| ||| |||||||| ||||||||||||||||||    
T  25507385 ataagctttctagaataacttatgaaaacaacttatagcttatat 25507341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 25558225 - 25558269
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||| | ||||||| |||||||| ||||||||||||||||||    
T  25558225 ataagctttgtaggataacttatgaaaacaacttatagcttatat 25558269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 25558423 - 25558467
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||| | ||||||| |||||||| ||||||||||||||||||    
T  25558423 ataagctttgtaggataacttatgaaaacaacttatagcttatat 25558467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 27481327 - 27481379
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    |||||||| || | ||||||||||||| | |||||||||||||||| ||||||    
T  27481327 cataagctatccatgatagcttatgaaaataacttatagcttatatggaaaca 27481379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 37497910 - 37497942
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||| |||||||||||||||||||||||||||    
T  37497910 cttatactataagtgcttaattaagttgtttat 37497942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 40530440 - 40530496
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaat 66  Q
    |||||||| ||| ||||||||||||| || |||||||||||||| | || |||||||    
T  40530440 ttcataagttctttaggatagcttattaaaacaacttatagcttttgtaaaaacaat 40530496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 45020221 - 45020181
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagctt 53  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  45020221 ataagctttccaggatatcttatgaatacaacttatagctt 45020181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 49060493 - 49060429
Alignment:
Q  98 atagcttatacatataaacttataggataactc-ttatgctataagtgcttaattaagttgttta 161  Q
    |||||||||||||| | ||||||| |||||  | |||| ||||||||||||||||||| ||||||    
T  49060493 atagcttatacataaatacttatatgataagccattatactataagtgcttaattaagctgttta 49060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 36646416 - 36646480
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||| ||||||||||||||||||||| |||| ||||| |||||||  ||||||||| ||||||||    
T  36646416 ataaactctctaggatagcttatgaaaacaagttataacttatatgaaaacaattatactttatt 36646480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 6801888 - 6801855
Alignment:
Q  14 taagctctctaggatagcttatgaatacaactta 47  Q
    ||||||||||||||||||||||||||||||||||    
T  6801888 taagctctctaggatagcttatgaatacaactta 6801855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 23249595 - 23249543
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    |||||||| |||| ||||||||||||| |||||||||| |||||||| |||||    
T  23249595 cataagctttctaagatagcttatgaaaacaacttatatcttatataaaaaca 23249543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 31337435 - 31337499
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||| ||||| ||  ||||||||    
T  31337435 ataagctttctagattagcttatgaatacaacttataacttatataaaaacagtttgactttatt 31337499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 43875684 - 43875640
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||    
T  43875684 ataagctctccatgatagcttatgaaaacaacttatagcttatat 43875640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 11253536 - 11253494
Alignment:
Q  14 taagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  11253536 taagctctctaggatagcttatgaa-acagcttatagcttatat 11253494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 20874451 - 20874482
Alignment:
Q  131 ttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||||||||||||||||||||    
T  20874451 ttatgctataagtgcttaattaagttgtttat 20874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 44061054 - 44061121
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||| |||||| |||| | |||||| ||||||||||||||||| | |||||||| ||| |||||    
T  44061054 ttcataagttctctaagatatcatatgaaaacaacttatagcttatagaaaaacaatttaaccttatt 44061121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 22214699 - 22214737
Alignment:
Q  19 tctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  22214699 tctctaggatagcttatgaaaacaacttataggttatat 22214737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 14548754 - 14548799
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||| || ||| |||||||| ||||||||||||||||||    
T  14548754 cataagctctccagaataacttatgaaaacaacttatagcttatat 14548799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 21872316 - 21872349
Alignment:
Q  24 aggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||| ||||||||||||||||||    
T  21872316 aggatagcttatgaaaacaacttatagcttatat 21872349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 24887316 - 24887361
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  24887316 cataagctctccaggatagcttatgaaaacagcttttagcttatat 24887361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 30956659 - 30956724
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||| |||| | |||||||| |||| |||||||||||| |||| | |||||||| |||||||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttatt 30956724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 30972471 - 30972536
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||| |||| | |||||||| |||| |||||||||||| |||| | |||||||| |||||||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttatt 30972536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40880988 - 40881033
Alignment:
Q  19 tctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    |||||||||||| ||||||| |||| ||||||||||||| ||||||    
T  40880988 tctctaggatagtttatgaaaacaatttatagcttatattgaaaca 40881033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 1816619 - 1816555
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||| || |||||||||||| |||||||||| |||||| | ||||| ||  ||||||||    
T  1816619 ataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactttatt 1816555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 4534491 - 4534523
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||| |||||||||||||||||||||||||||    
T  4534491 cttatactataagtgcttaattaagttgtttat 4534523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 10101510 - 10101574
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||||| ||  ||||||||| ||||||| || |||||||  |||||||| |||||||||    
T  10101510 ataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaacaatttaactttatt 10101574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 10212435 - 10212499
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    |||||||||||| ||  ||||||||| ||||||| || |||||||  |||||||| |||||||||    
T  10212435 ataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaacaatttaactttatt 10212499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 29113501 - 29113453
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    |||||||||| ||||||| |||||||||| | || ||||||||||||||    
T  29113501 ttcataagctttctaggacagcttatgaacaaaatttatagcttatata 29113453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 42753638 - 42753598
Alignment:
Q  17 gctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  42753638 gctctctaggatagcttgtaaaaacaacttatagcttatat 42753598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39983381 - 39983334
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  39983381 ttcattagctctccaggatagcttatgaaaacaacttatagcttatat 39983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 10884552 - 10884592
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatag 50  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  10884552 ttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 29936041 - 29935985
Alignment:
Q  12 cataagctctct-aggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    |||||||||||| ||||||||||||||| | ||||||||||||| || |||||||||    
T  29936041 cataagctctcttaggatagcttatgaaaaaaacttatagcttacatggaaacaatt 29935985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 938541 - 938588
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    |||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  938541 ttcagaagctctctaagatagcttatgaataccgcttatagcttatat 938588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 6993755 - 6993802
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatat 57  Q
    ||||||||||||| || |||||||||||| ||||| ||||||||||||    
T  6993755 ttcataagctctcaagcatagcttatgaaaacaacctatagcttatat 6993802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 11513921 - 11513870
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 11513870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 18066151 - 18066100
Alignment:
Q  26 gatagcttatgaatacaacttatagcttatatagaaacaattaaactttatt 77  Q
    ||||||||||||| ||| ||||||||||||||  |||||||| |||||||||    
T  18066151 gatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttatt 18066100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 22681218 - 22681273
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    |||||| |||||||||||| ||||||| ||| ||||||||||||||  ||||||||    
T  22681218 cataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatt 22681273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 43141896 - 43141853
Alignment:
Q  24 aggatagcttatgaatacaacttatagcttatatagaaacaatt 67  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||    
T  43141896 aggatagcttatgaaaacatcttatagcttatatggaaacaatt 43141853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 9477991 - 9477945
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttata 56  Q
    ||||||| ||||| ||||||||||||||| |||||||||| ||||||    
T  9477991 ttcataacctctccaggatagcttatgaaaacaacttataacttata 9477945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13736324 - 13736366
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagct 52  Q
    |||||||||||||||| |||||||||||| ||| |||||||||    
T  13736324 ttcataagctctctagtatagcttatgaaaacagcttatagct 13736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10143214 - 10143157
Alignment:
Q  7 atattcataagctctctaggatagcttatgaatacaacttatagcttatatagaaaca 64  Q
    |||| ||||| ||||| | ||||||||||||| | ||||||||||||||||| |||||    
T  10143214 atatccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaaca 10143157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 29510631 - 29510583
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    ||||||||||||| | ||||||||| ||| ||||||||||| |||||||    
T  29510631 ttcataagctctcaaagatagcttaggaaaacaacttatagtttatata 29510583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 33942189 - 33942145
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagctta 54  Q
    ||||| ||||||||| ||| ||||||||| |||||||||||||||    
T  33942189 ttcattagctctctatgatggcttatgaaaacaacttatagctta 33942145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 34649322 - 34649358
Alignment:
Q  13 ataagctctctaggatagcttatgaatacaacttata 49  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  34649322 ataagctctctaggatggcttatgaaaacaacttata 34649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 34926988 - 34926956
Alignment:
Q  25 ggatagcttatgaatacaacttatagcttatat 57  Q
    |||||||||||||| ||||||||||||||||||    
T  34926988 ggatagcttatgaaaacaacttatagcttatat 34926956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 36863656 - 36863704
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatata 58  Q
    ||||||||||||| | ||||||||||||| |||| ||||| ||||||||    
T  36863656 ttcataagctctccaagatagcttatgaaaacaatttataacttatata 36863704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 43456835 - 43456867
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||||||||||||||| |||||    
T  43456835 cttatgctataagtgcttaattaagttttttat 43456867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 43635250 - 43635282
Alignment:
Q  130 cttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||||||||||||| |||||||    
T  43635250 cttatgctataagtgcttaattaagctgtttat 43635282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 306363 - 306329
Alignment:
Q  12 cataagctctctaggatagcttatgaatacaactt 46  Q
    ||||||||||||||||||||||||||| |||||||    
T  306363 cataagctctctaggatagcttatgaaaacaactt 306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 1191 - 1256
Alignment:
Q  98 atagcttatacatataaacttataggata-actcttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||   ||||||| |||| ||  ||||||||||||| ||||||||||||||||||    
T  1191 atagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttat 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 2784 - 2719
Alignment:
Q  98 atagcttatacatataaacttataggata-actcttatgctataagtgcttaattaagttgtttat 162  Q
    ||||||||||||||   ||||||| |||| ||  ||||||||||||| ||||||||||||||||||    
T  2784 atagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttat 2719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 40270 - 40217
Alignment:
Q  10 ttcataagctctctaggatagcttatgaatacaacttatagcttatatagaaac 63  Q
    ||||||||||||  |||||| |||||||| ||||||||||||||| || |||||    
T  40270 ttcataagctcttcaggataacttatgaaaacaacttatagcttacatggaaac 40217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 26163 - 26223
Alignment:
Q  103 ttatacatataaacttataggataact-cttatgctataagtgcttaattaagttgtttat 162  Q
    |||| |||||||||||||| ||||| | |||||||||||||  |||||||||| |||||||    
T  26163 ttatccatataaacttatatgataagtgcttatgctataagcacttaattaaggtgtttat 26223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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