View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_high_4 (Length: 472)
Name: NF10151_high_4
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 33169105 - 33169527
Alignment:
| Q |
19 |
gtacaatggtataggtcacaacgtggttgactcaaatgtaatattgatgcctctttttcgcataagcttaatagaacaagtataggtatgtacttgcgag |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33169105 |
gtacaatggtataggtcacaacttggttgactcaaatgtaatattgatgcctctttttcgcataagctaaatagaacaagtataggtatgtacttgcgag |
33169204 |
T |
|
| Q |
119 |
atgaggatgatgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtgggggaagcgttgggtttgttcatgcgcttcaatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
33169205 |
atgaggatgatgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtggtggaagcg-----------------cttcaatgg |
33169287 |
T |
|
| Q |
219 |
accagtgatatgcatgcaatttgataatattgatttcgtgcttgattgcaaaaccccaacaaatgcctt-actgaatcagattgatgttatagaacttgg |
317 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33169288 |
actagtgatatgca----atttgataatgttgatttcatgcttgattgcaaaaccccaacaaatgccttcactgaatcagattgatgttatagaacttgg |
33169383 |
T |
|
| Q |
318 |
ttatgttatcacaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaataaatgaggccactcatattttaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33169384 |
ttatgttatcacaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaacaaatgaggccactcatattttaa |
33169483 |
T |
|
| Q |
418 |
caggggtagccatgttatcaactagtctcaccgcttattttcat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33169484 |
caggggtagccatgttatcaactagtctcaccgcttattttcat |
33169527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University