View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_10 (Length: 418)
Name: NF10151_low_10
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 26 - 402
Target Start/End: Original strand, 5752456 - 5752832
Alignment:
| Q |
26 |
aaataattgaatgccaaaccgcatggaggagagttgtttcccttgctgtcaattcaggtatcagcatcccaggtatgtatgctagtcttgcatattttga |
125 |
Q |
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| T |
5752456 |
aaataattgaacgccaaaccgcatggaggagagttgtttcccttgctgtcaattcaggtatcagcctcccgggtatgtctgctagtcttgcatattttga |
5752555 |
T |
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| Q |
126 |
cacttatagaagggaaaggttgccacctaatttggtgcgagctcaacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtac |
225 |
Q |
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| T |
5752556 |
ctcttatagaagggaaaggttgccagctaatttggtgcaagctcaacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtac |
5752655 |
T |
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| Q |
226 |
catactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttcaagattcctaataaatgtaatgttttttaatcaagac |
325 |
Q |
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| T |
5752656 |
catactgaatggttcaagcttgccaagcagtcgaggatttagattactgtgtttgaactcttcaagattcctaataaatgtaatgttttttactcaagac |
5752755 |
T |
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| Q |
326 |
tgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccattttgtactactcaattacttgg |
402 |
Q |
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| T |
5752756 |
tgtatactgagttgagcttacatagctgcaatgcggtgaagtttatttataccattctgtactacttaattacttgg |
5752832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 189 - 381
Target Start/End: Original strand, 5756533 - 5756725
Alignment:
| Q |
189 |
tcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttc |
288 |
Q |
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| T |
5756533 |
tcatacatatgaaagggttgatatcgacgggtcttaccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttc |
5756632 |
T |
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| Q |
289 |
aagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccatt |
381 |
Q |
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| T |
5756633 |
aagattcctaataaatgtaatgttttttactcaagactgtatgctgagttgagcttacatagctgcaatgcggtgaagtttatatataccatt |
5756725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 6078984 - 6079057
Alignment:
| Q |
130 |
tatagaagggaaaggttgccacctaatttggtgcgagctcaacgagactacttcggtgctcatacatatgaaag |
203 |
Q |
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| T |
6078984 |
tatagaagggaaagattgccagcaaatttggtccaagctcaaagagattactttggtgctcatacatatgaaag |
6079057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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