View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_11 (Length: 402)
Name: NF10151_low_11
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 76 - 402
Target Start/End: Original strand, 11482314 - 11482639
Alignment:
| Q |
76 |
tatagatacaatcctcgtataagagttgtgactttatcaatcaataatccggcaggcaaaaacaattg-cttcttaggtaccagattacacgtagtaagt |
174 |
Q |
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| T |
11482314 |
tatagatacaatcctcgtataagagttgtgactttatcaat----aatccggcaggcaaaaacaagtgtcttcttaggtaccagattacacgtagtaagt |
11482409 |
T |
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| Q |
175 |
ttctaaattatttgattattttttaataacactttgtattctttctattgaaaattctctcaaannnnnnnctattttcaatctccaccgcgaatataca |
274 |
Q |
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| T |
11482410 |
ttctaaattatttgattattttttaataatactttgtattctttctattgaaaattctctcaaatttttttctattttcaatctccaccgcgaatataca |
11482509 |
T |
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| Q |
275 |
aaaaattcaatatttttaattctcgttctctctcatgtc-gatggttgagatttcaacaattttgaatgtagtgtatctaacaattgatgcataattgct |
373 |
Q |
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| T |
11482510 |
aaaaattcaatatttttaattcccgttctctctcatgtctgatggttgagatttcaacaattttgaatgtagtgtatctaacaatcgatgcataattgct |
11482609 |
T |
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| Q |
374 |
g-ttttttccaatcttccttctccttttct |
402 |
Q |
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| T |
11482610 |
gcttttttccaatcttccttctccttttct |
11482639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 11482250 - 11482297
Alignment:
| Q |
7 |
aaattgctgatgtaagcctgtataagagtaactgcatattcctcttaat |
55 |
Q |
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| T |
11482250 |
aaattgctgatgtaagcct-tataaaagtaactgcatattcctcttaat |
11482297 |
T |
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