View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_low_12 (Length: 399)
Name: NF10151_low_12
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 13826993 - 13827282
Alignment:
| Q |
11 |
tgtggataattgctttgctaaattcagtattgatttaattggccaagggataatgtttttacttttgtttcatgaattagtcccttttacca----agct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13826993 |
tgtggataattgctttgctaaattcagtattgatttaattggccaagggataatgtttttacttttgtttcatgaattagtcccttttaccatattagct |
13827092 |
T |
|
| Q |
107 |
tataaaaataagtttcnnnnnnnnnnnctttaatnnnnnnntatgtttcatatcctaggagcttttttgagggaatatcctaagagcttttaatctttct |
206 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13827093 |
tataaaaataagtttc-ttttttttttctttaataaaaaaatatgtttcatatcctaggagcttttttgagggaatatcctaagagcttttaatttttct |
13827191 |
T |
|
| Q |
207 |
tgtttgnnnnnnnnnnccttgttgggctggtccatttgtttaaaataatatatagggtcatgttaatcagtacccccaaagcattagttaa |
297 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||| |
|
|
| T |
13827192 |
ttgtttgtttttttttctttgttgggctggtccatttgtttaaaataatatataaggtcacgttaaccagtactcccaggacattagttaa |
13827282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 13827349 - 13827384
Alignment:
| Q |
364 |
agtaacatacacaattttcaagaaaatatttcttct |
399 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13827349 |
agtaacatacacaattttcaaaaaaatatttcttct |
13827384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 7313270 - 7313303
Alignment:
| Q |
364 |
agtaacatacacaattttcaagaaaatatttctt |
397 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
7313270 |
agtaatatacacaattttcaagaaaatatttctt |
7313303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University