View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_13 (Length: 399)
Name: NF10151_low_13
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 4931878 - 4931492
Alignment:
| Q |
1 |
gtgattggaaattcatttgcctcgattacatgggaatcattttgatattttgaagagtaattcttgcatgagatcgtagttttcgatcataactactcaa |
100 |
Q |
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| T |
4931878 |
gtgagtggaaattcatttccctcgattacatgggaatcattttgatattttgaagagtaattcttgcatgagatcgtagttttcgatcataactactcaa |
4931779 |
T |
|
| Q |
101 |
aaattcatgatatattaaaatgattaaaaggtgtccgtgtgcacaactgtggaggcttcggcatgggcgtatggtgtaaatgattgataagtaaatgatt |
200 |
Q |
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| T |
4931778 |
aaattcatgatacattaaaatgattaaaaggtgtccgtgtgcacaactgtggaggcttcggcatgggcgtatggtgtaaatgattgataagtaaatgatt |
4931679 |
T |
|
| Q |
201 |
gtaatgttgaaagggtgaaaggtgaaatatgtgatgtatattccatatccttcagatgatatagatagatttgcatcgaagtgtgaatatgatca-nnnn |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4931678 |
gtaatgttgaaagggtgaaaggtgaaatatgtgatgtatattccatatccttcagatgatatagatagatttgcattgaagtgtgaatacgatcattttt |
4931579 |
T |
|
| Q |
300 |
nnnncttattttatattccctcaaactatcatatgcattttttgtccaaaaagaggacaatgtagagatttagatagtccatgtgat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4931578 |
ttttcttattttatattccctcaaactatcatatgcattttttgtccaaaaagaggacaatgtagagatttagatagtccatgtgat |
4931492 |
T |
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