View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_low_14 (Length: 395)
Name: NF10151_low_14
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 48 - 388
Target Start/End: Original strand, 42270908 - 42271248
Alignment:
| Q |
48 |
aataatgtgcgttagaatttcagaacacaggnnnnnnnnttcatatgctattggctgaaaacatggatctgtccaatgatattattttgtgacacttctt |
147 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270908 |
aataatgtgcgttagaatttcagtacaaaggaaaaaaaattcatatgctattgactgaaaacatggatctgtccaatgatattattttgtgacacttctt |
42271007 |
T |
|
| Q |
148 |
aatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttattactatatattattgaaactggcaagaaattttattg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42271008 |
aatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttactgctatatattattgaaactggcaaaaaattttattg |
42271107 |
T |
|
| Q |
248 |
ctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttttaagttaggtatatagggttaaagtatactatggnnn |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42271108 |
ctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttttaagttaggtatatagggttaaagtatacgatggttt |
42271207 |
T |
|
| Q |
348 |
nnnncagtgtgagtaaataatattcttctaggcctttgctt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42271208 |
ttttcagtgtgagtaaataatattcttctaggcctttgctt |
42271248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University