View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_low_16 (Length: 391)

Name: NF10151_low_16
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_low_16
NF10151_low_16
[»] chr3 (16 HSPs)
chr3 (1-349)||(7032080-7032428)
chr3 (41-342)||(40930565-40930866)
chr3 (1-377)||(34332817-34333193)
chr3 (260-333)||(19920275-19920348)
chr3 (1-333)||(2364039-2364371)
chr3 (260-333)||(10323617-10323690)
chr3 (260-333)||(7312797-7312870)
chr3 (264-377)||(29523747-29523860)
chr3 (264-377)||(11203844-11203957)
chr3 (264-342)||(33496572-33496650)
chr3 (1-115)||(7312539-7312653)
chr3 (264-377)||(12342228-12342340)
chr3 (3-118)||(10323832-10323947)
chr3 (264-333)||(7031063-7031132)
chr3 (219-342)||(2755822-2755945)
chr3 (264-342)||(963200-963278)
[»] chr6 (15 HSPs)
chr6 (1-342)||(18651271-18651612)
chr6 (1-342)||(24767461-24767802)
chr6 (1-333)||(12733887-12734219)
chr6 (171-347)||(2553569-2553745)
chr6 (1-132)||(21167987-21168118)
chr6 (40-134)||(5734486-5734580)
chr6 (264-342)||(17579118-17579196)
chr6 (260-377)||(21630109-21630226)
chr6 (264-342)||(17573692-17573770)
chr6 (264-342)||(17606371-17606449)
chr6 (264-333)||(10577295-10577364)
chr6 (258-347)||(21168218-21168307)
chr6 (264-331)||(15958861-15958928)
chr6 (264-342)||(13937725-13937803)
chr6 (264-377)||(20883035-20883148)
[»] chr7 (8 HSPs)
chr7 (1-342)||(235474-235817)
chr7 (1-333)||(47876745-47877077)
chr7 (39-343)||(17720435-17720739)
chr7 (1-377)||(11277254-11277630)
chr7 (54-325)||(37919359-37919630)
chr7 (42-342)||(29967778-29968078)
chr7 (260-333)||(4938174-4938247)
chr7 (264-325)||(18532653-18532714)
[»] chr4 (18 HSPs)
chr4 (1-333)||(7403675-7404007)
chr4 (1-347)||(15739983-15740329)
chr4 (1-342)||(19755024-19755370)
chr4 (1-342)||(19784436-19784782)
chr4 (1-325)||(47685949-47686273)
chr4 (1-168)||(20788491-20788657)
chr4 (210-377)||(1828542-1828709)
chr4 (1-333)||(23642637-23642969)
chr4 (260-333)||(47418825-47418898)
chr4 (260-333)||(13270937-13271010)
chr4 (264-333)||(12697838-12697907)
chr4 (249-342)||(55725723-55725816)
chr4 (1-118)||(13271152-13271269)
chr4 (264-342)||(45472746-45472824)
chr4 (1-116)||(159954-160069)
chr4 (265-375)||(8361126-8361236)
chr4 (264-342)||(20002750-20002828)
chr4 (264-377)||(2822039-2822152)
[»] chr5 (23 HSPs)
chr5 (1-342)||(42927893-42928234)
chr5 (39-342)||(28535712-28536015)
chr5 (1-342)||(19255159-19255501)
chr5 (39-323)||(35983847-35984131)
chr5 (1-376)||(23238145-23238521)
chr5 (1-347)||(8227788-8228134)
chr5 (39-134)||(25824811-25824906)
chr5 (1-333)||(30732360-30732692)
chr5 (2-333)||(12824962-12825293)
chr5 (1-333)||(27117207-27117539)
chr5 (239-342)||(31641512-31641614)
chr5 (260-333)||(42513741-42513814)
chr5 (264-377)||(25857426-25857539)
chr5 (260-377)||(27767063-27767180)
chr5 (264-377)||(33385376-33385489)
chr5 (264-342)||(10776789-10776867)
chr5 (264-377)||(8300184-8300297)
chr5 (1-118)||(42513482-42513599)
chr5 (1-118)||(3418545-3418662)
chr5 (1-115)||(12820213-12820327)
chr5 (264-342)||(33169683-33169761)
chr5 (225-342)||(27795469-27795586)
chr5 (260-292)||(12820036-12820068)
[»] chr8 (18 HSPs)
chr8 (39-343)||(9922401-9922705)
chr8 (1-342)||(13396150-13396491)
chr8 (1-347)||(32266326-32266672)
chr8 (1-342)||(41665406-41665747)
chr8 (1-347)||(8299565-8299911)
chr8 (1-333)||(171865-172197)
chr8 (1-333)||(7924148-7924480)
chr8 (249-377)||(13200133-13200261)
chr8 (264-377)||(20824321-20824434)
chr8 (264-342)||(17699507-17699585)
chr8 (1-127)||(32567517-32567643)
chr8 (1-118)||(20496846-20496963)
chr8 (264-377)||(2170367-2170480)
chr8 (264-377)||(37434157-37434270)
chr8 (264-331)||(34137011-34137078)
chr8 (254-311)||(2529901-2529958)
chr8 (225-342)||(13879524-13879641)
chr8 (259-331)||(43270470-43270542)
[»] chr2 (5 HSPs)
chr2 (63-342)||(41206840-41207119)
chr2 (1-333)||(4551931-4552263)
chr2 (254-342)||(12645551-12645639)
chr2 (209-321)||(15917624-15917736)
chr2 (264-377)||(40176693-40176806)
[»] scaffold0472 (1 HSPs)
scaffold0472 (54-347)||(3067-3360)
[»] chr1 (12 HSPs)
chr1 (1-333)||(51052242-51052574)
chr1 (260-333)||(11909151-11909224)
chr1 (240-333)||(35541050-35541143)
chr1 (260-333)||(6050624-6050697)
chr1 (41-134)||(6259619-6259712)
chr1 (264-377)||(16917811-16917924)
chr1 (1-118)||(35540811-35540928)
chr1 (1-100)||(26059653-26059752)
chr1 (264-342)||(43388392-43388470)
chr1 (1-134)||(4842166-4842299)
chr1 (264-333)||(47623123-47623192)
chr1 (1-105)||(13352076-13352180)
[»] scaffold0369 (1 HSPs)
scaffold0369 (36-333)||(11251-11548)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-333)||(105889-106221)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 7032080 - 7032428
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032080 aaacacaaagtaaccaaatcaagtgaaaaaaagatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 7032179  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032180 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 7032279  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032280 caacctgagacacacgaccgcgcatccaaaggtaaaagaccacaattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 7032379  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaattagg 349  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7032380 tagaaattttgagaggaacctgtttgtgccaaaccaactccaaattagg 7032428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 41 - 342
Target Start/End: Complemental strand, 40930866 - 40930565
Alignment:
Q  41 ccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcagac 140  Q
    ||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||   | |    
T  40930866 ccctctcgaacaacctgcataattaataaattgcaaaaaatgatccgaagttgattgagagtcgacccctaccactccaagccatgcccgcaccattggc 40930767  T
Q  141 cataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagac 240  Q
    ||||| || || ||||| |  ||   ||| ||||||||| | ||||||||||||  ||| ||||  || |||||| ||||||| |||||||||||||| |    
T  40930766 cataaggcactaaaagttgaacaagacaaaaacaaatgattgacatcttcgacgttcccacaaccagaaacacacaaccgcgcctccaaaggtaaaaggc 40930667  T
Q  241 cacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactc 340  Q
    |||| || |||| ||| |||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| || ||||| |||||    
T  40930666 cacggtttgccaaattattttttgtaggtaaccaatccctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaactc 40930567  T
Q  341 ca 342  Q
    ||    
T  40930566 ca 40930565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 34333193 - 34332817
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || ||||| ||||||||||||||||| |||| ||  ||||| ||||||||    
T  34333193 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatttgaagttgattgaga 34333094  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| |||||||||||||||   | |||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  |||     
T  34333093 gtcgacccctaccactcctagccatgcccgcaccattggccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttccca 34332994  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  ||||| || |||| ||| |||||||||||||| ||||| ||||||||| |||| |||||||    
T  34332993 catccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaatcgatctctcagaagttgccaagcaagga 34332894  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggttgctcctgtgatgtc 377  Q
    |||| |||||||||||||||||||| |||||||  ||||||| |||| || | |   |||| |||||||||||||||    
T  34332893 tagatactttgagaggaacctgtttatgccaaattaactccatattatgatgtaactggggctgctcctgtgatgtc 34332817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 19920348 - 19920275
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  19920348 ttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaa 19920275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 2364039 - 2364371
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| || |||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  2364039 aaacacaaagcaatcaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 2364138  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || |||||||| | |||   |||||||   | |||||| || |  ||||| |  ||   ||| |||||||||||||||||||||||   |||     
T  2364139 gtcgacacctaccactcctaaccaatgccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatccca 2364238  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  |  || ||  ||||| | |||| || || ||  |||||||| |||| |||   |||||||||||||||||||||||| |||||||| |||||||    
T  2364239 catccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaagga 2364338  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||||||||| |||||||| |||||||    
T  2364339 tagatactttgagagggacctgtttatgccaaa 2364371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 10323690 - 10323617
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  10323690 ttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaa 10323617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 7312797 - 7312870
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  7312797 ttttgtaggtaaccgatccctcattagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaa 7312870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 29523860 - 29523747
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  29523860 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 29523761  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  29523760 gttcctgtgatgtc 29523747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 11203844 - 11203957
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||| ||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  11203844 gtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 11203943  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  11203944 gttcctgtgatgtc 11203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 33496572 - 33496650
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  |||||||| |||| |||||||||||| | |||||||||||| |||||||  |||||||    
T  33496572 gtaggtaaacgatccctcaacagtcgccaagcaatgatagaaacttttaaaggaacctgtttatgccaaattaactcca 33496650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7312539 - 7312653
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       ||||| ||||||||||| || |||||||||| ||||||||||   |||| ||| ||||| ||| ||||    
T  7312539 aaacacaaagcaaccaaatcaagtgcaagaaagatcgtcgccctctcgaacaacctgcataataaataaattgctcaaaatgatctgaagttgatcgaga 7312638  T
Q  101 gtcgacccccaccac 115  Q
    |||||| || |||||    
T  7312639 gtcgacacctaccac 7312653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 12342340 - 12342228
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | | |||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  12342340 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaactttta-aagaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 12342242  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  12342241 gttcctgtgatgtc 12342228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 10323947 - 10323832
Alignment:
Q  3 acacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagt 102  Q
    |||||||| ||||||||||||||       || || ||||||||||| || |||||||| |  ||||||||||  || | ||||||||| ||||||||||    
T  10323947 acacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcatattgtataaattgcacaaagtgatcagaagttgattgagagt 10323848  T
Q  103 cgacccccaccactcc 118  Q
    |||| || ||||||||    
T  10323847 cgacacctaccactcc 10323832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 7031132 - 7031063
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||| ||||||||||  || ||||| ||||||||||||| ||| | |||||||||||| |||||||    
T  7031132 gtaggtaagcgatccctcaacagacgccaagcaaggatagaaagttttaaaggaacctgtttatgccaaa 7031063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 2755822 - 2755945
Alignment:
Q  219 cgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaa 318  Q
    ||||| ||||||| ||| |  |||||| | |||| ||| | ||| ||||||||||| |||||||| |  ||||| ||||  ||||| ||||| | ||| |    
T  2755822 cgcgcctccaaagataagaccccacgacttgccaaattttatttagtaggtaaccggtccctcagcaaacgccaagcaaatatagacactttcaaaggta 2755921  T
Q  319 cctgtttgtgccaaaccaactcca 342  Q
    ||||||||||||||| ||||||||    
T  2755922 cctgtttgtgccaaatcaactcca 2755945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 963278 - 963200
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||||| |||||||| |  ||||| ||||  ||||| ||||| | ||| |||||||||||||||| ||||||||    
T  963278 gtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactcca 963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 18651612 - 18651271
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||||||||||||||||||       ||||| ||||||||||| || |||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  18651612 aaacacaaagtaaccaaatcaagtgaaaaaaagatcgtcgccctctcgaacaacctgcataattaataaattgcaacaaatgatctgaagttgattgaga 18651513  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| |||||||| ||||||   | | |||| ||||| ||||| || ||||| |||||||| ||| | |||||||| |||| ||||    
T  18651512 gtcgaccccgaccactcctagccatgctcgcaccaatggcaataaggcgctaaaagttggacacacaaagaacaagtgattgacatcttcaacggtcccg 18651413  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  ||||||||| |||||||||||||||||||||  ||||| ||  ||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  18651412 catccagagacacacaaccgcgcatccaaaggtaaaatcccacggttttccaaattattttttgtaggtaaccgatccctcagaagtcgccaagcaagga 18651313  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| |||||||||||||||||||| |||||||  |||||||    
T  18651312 tagagactttgagaggaacctgtttatgccaaattaactcca 18651271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 24767802 - 24767461
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       ||  | ||||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  24767802 aaacacaaagcaaccaaatcaagtggaaaaaagaatgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaagttgattgaga 24767703  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| ||||||||||||||||||||||||   |  ||||| || || ||||| || ||   ||| ||||||| | |||||||||| |||  ||||    
T  24767702 gtcgacccctaccactccgagccatgcccgcaccaatggtcataaggcactaaaagttggacaagacaaaaacaaattattaacatcttcaacgttcccg 24767603  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    ||||   | |||||| ||||||| |||||||||||||  |||||||| |||| ||| ||||||||||||||||||||||| |||||||| || |||||||    
T  24767602 caaccaaaaacacacaaccgcgcctccaaaggtaaaatgccacgatttgccaaattattttttgtaggtaaccgatccctaagaagtcgtcaagcaagga 24767503  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| ||||||| |||||||||||| ||| |||  |||||||    
T  24767502 tagagactttgataggaacctgtttatgcaaaattaactcca 24767461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12733887 - 12734219
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || || |||||||||||||||||||  |||| ||| ||||| ||||||||    
T  12733887 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaaccggcataattaataaattgcacaaaatgatctgaagttgattgaga 12733986  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| | |||  || |||||   | |||||| || |  ||||| |  ||   ||| |||||||||| ||||||||||||   |||     
T  12733987 gtcgacccctaccactcctaaccaatcctgcaccatcggccataatgctccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacattccca 12734086  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || || || |||||  ||||| | |||| || || ||  |||||  |  ||| |||   ||||||||||||||||||||||||||||||||| |||||||    
T  12734087 catctagaaacacataaccgctcctccagagatagaatgccacgggttaccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaagga 12734186  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  12734187 tagatactttgagaggaacctgtttatgccaaa 12734219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 171 - 347
Target Start/End: Original strand, 2553569 - 2553745
Alignment:
Q  171 aacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggta 270  Q
    ||||||||| |||||||||| |||  ||| || |  || |||||| || |||| |||||||||||||  ||||| || |||| ||| |||||||||||||    
T  2553569 aacaaatgattaacatcttcaacgttcccacatccagaaacacacaactgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggta 2553668  T
Q  271 accgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||||||  ||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||  ||||||| ||||    
T  2553669 accgatctttcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatta 2553745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21167987 - 21168118
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || | ||||||||| || ||||| ||||||||||||||||| |||| ||| ||||| ||||||||    
T  21167987 aaacacaaagcaaccaaatcaagtggaagaaagaccgtctccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaagttgattgaga 21168086  T
Q  101 gtcgacccccaccactccgagccatgcccgca 132  Q
     ||||||||||||||||| |||||||| ||||    
T  21168087 atcgacccccaccactcctagccatgctcgca 21168118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 5734580 - 5734486
Alignment:
Q  40 gccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcacc 134  Q
    |||||||||| || ||||||||||||||||||||||  |||| ||| ||||| ||||||||||| ||||  |||||||| |||||||| ||||||    
T  5734580 gccctctcgaacaacctgcataattaataaattgcacaaaatgatctgaagttgattgagagtcaacccttaccactccaagccatgctcgcacc 5734486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 17579196 - 17579118
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  |||||||    
T  17579196 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactcca 17579118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 21630226 - 21630109
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaataggg 359  Q
    |||||||||||| ||||||||||  ||||||||  |||||||||||||||| | ||||||||| || |||||||  ||||||| |||  || ||| | |     
T  21630226 ttttgtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattttgatgaacatga 21630127  T
Q  360 ggttgctcctgtgatgtc 377  Q
    ||||| ||||||||||||    
T  21630126 ggttgttcctgtgatgtc 21630109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 17573770 - 17573692
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  |||||||| |||||||||||| |||| | |||||||||||| |||||||  |||||||    
T  17573770 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaatcttttaaaggaacctgtttatgccaaattaactcca 17573692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 17606449 - 17606371
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||  |||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  |||||||    
T  17606449 gtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactcca 17606371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 10577364 - 10577295
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||| ||||||||||  |||||||| ||||||||| ||||||| | |||||||||||| |||||||    
T  10577364 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaa 10577295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 21168218 - 21168307
Alignment:
Q  258 ttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||||||||||||| |||||   || ||||| ||| || |||||||| |||||||||||||||| ||| |||||||  ||||||| ||||    
T  21168218 ttttttgtaggtaatcgatcttgcaaaagtctccaagctaggatagatactttgagaggaacctatttatgccaaattaactccatatta 21168307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 15958928 - 15958861
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgcca 331  Q
    ||||||||  ||||||||| ||| ||||| ||||| ||||| ||||| |||||||||||||| |||||    
T  15958928 gtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgcca 15958861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 13937725 - 13937803
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||||| |||||||| |  ||||| ||||  ||||| ||||| | ||| |||||||||||||||| ||||||||    
T  13937725 gtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactcca 13937803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 20883148 - 20883035
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| | ||||||||  || ||||| ||||||||||||||||| | |||||||| ||| ||||| |  ||||||| |||  || ||| | | ||||    
T  20883148 gtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagattaactccatattttgatgaacatgtggtt 20883049  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  20883048 gttcctgtgatgtc 20883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 235817 - 235474
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || ||||||||||||||||||||||| |||| ||| ||| | ||||||||    
T  235817 aaacacaaagcaaccaaatcaagtggaagaaagaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaatttgattgaga 235718  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| ||||||||||||||||||||||||   | |||||| || || ||||| |  ||   ||| ||||||||| |||||||||| |||  | ||    
T  235717 gtcgacccctaccactccgagccatgcccgcaccattggccataaggcactaaaagttgaacaagacaaaaacaaatgattaacatcttcaacgttctcg 235618  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagat--tgttttttgtaggtaaccgatccctcagaagtcgccatgcaag 298  Q
    ||||  || |||||| ||||||| |||||||||||||  ||||| || |||| ||  | ||||||||||||||||||||||||||||||||||| |||||    
T  235617 caaccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaatgattttttttgtaggtaaccgatccctcagaagtcgccaagcaag 235518  T
Q  299 gatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||| ||||||||| |||||||||| |||||||  |||||||    
T  235517 gatagagactttgagatgaacctgtttatgccaaattaactcca 235474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 47876745 - 47877077
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || |  ||||||||||| || ||||||||||||||||||||||| |||| ||| ||||| |||| |||    
T  47876745 aaacacaaagcaaccaaatcaagtggaagaaagaccatcgccctctcgaacaacctgcataattaataaattgcaaaaaataatctgaagttgattaaga 47876844  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| ||||||||||||| |      ||||| || || ||||| |  ||   ||| ||||||||| |||||||||| |||  ||||    
T  47876845 gtcgacccctaccactcctagccatgcccgcatcaattgtcataatgcactaaaagttgaacaagacaaaaacaaatgattaacatcttcaacgttcccg 47876944  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  ||||| || |||| ||| ||||||||||||||| |||| |||||||||||||| |||||||    
T  47876945 catccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaactgatctctcagaagtcgccaagcaagga 47877044  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  47877045 tagatactttgagaggaacctgtttatgccaaa 47877077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 343
Target Start/End: Original strand, 17720435 - 17720739
Alignment:
Q  39 cgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcag 138  Q
    ||||||||||| || ||||||||||||||||||||||  |||| ||| ||||| ||||||||||| ||||| |||||||| ||||||||  |||||   |    
T  17720435 cgccctctcgaacatcctgcataattaataaattgcactaaatgatctgaagttgattgagagtcaacccctaccactccaagccatgcttgcaccaatg 17720534  T
Q  139 accataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaag 238  Q
     |||||| || || ||||| |  ||   ||| ||||||||| ||||||||||  |   ||| ||||| || ||||||  |||||| |||| ||||||||     
T  17720535 gccataaggcactaaaagttgcacaagacaaaaacaaatgattaacatcttcttcattcccacaactagaaacacacatccgcgcctccagaggtaaaat 17720634  T
Q  239 accacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaac 338  Q
     ||||| || |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  |||    
T  17720635 gccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaac 17720734  T
Q  339 tccaa 343  Q
    |||||    
T  17720735 tccaa 17720739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 11277630 - 11277254
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || ||||||||||| || ||||| ||||||||||||||||| |||| ||| ||||| || |||||    
T  11277630 aaacacaaagcaaccaaattaagtggaagaaagaccgacgccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaagttgaatgaga 11277531  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     ||||| ||||||||||| |||||||| ||||||   | |||||| || || ||| |    ||   | | ||||||||| |||||||||| |||  |||     
T  11277530 atcgactcccaccactcctagccatgctcgcaccattggccataatgcactaaaatttacacaagactaaaacaaatgattaacatcttcaacgttccca 11277431  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  ||||| || |||| ||| ||||| |||||||||||||| |||| ||||||||| |||||||    
T  11277430 catccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattatttttcgtaggtaaccgatctctcaaaagtcgccaagcaagga 11277331  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggttgctcctgtgatgtc 377  Q
    |||| |||||||||||||||||||| |||||||  ||||||| |||| |  | |   ||||||||||||||||||||    
T  11277330 tagatactttgagaggaacctgtttatgccaaattaactccatattatggtgtaactggggttgctcctgtgatgtc 11277254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 325
Target Start/End: Original strand, 37919359 - 37919630
Alignment:
Q  54 cctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctga 153  Q
    ||||| ||||||||||||||||| |||| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||||   | |||||| || || |    
T  37919359 cctgcgtaattaataaattgcaaaaaatgatctgaagttgattgagattcgacccctaccactcctagccatgcccgcaccattggccataatgcactaa 37919458  T
Q  154 aagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccag 253  Q
    ||||    ||   ||| || |||||| |||||||||| |||  ||| ||||| || |||||| ||||||| |||||||||||||  | ||| || ||||     
T  37919459 aagttacacaagacaaaaataaatgattaacatcttcaacgttcccacaactagaaacacacaaccgcgcctccaaaggtaaaatgcaacggtttgccaa 37919558  T
Q  254 attgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgttt 325  Q
    ||| |||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  37919559 attattttttgtaggtaaccaatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgttt 37919630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 342
Target Start/End: Original strand, 29967778 - 29968078
Alignment:
Q  42 cctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcagacc 141  Q
    |||||||| || ||||| ||||| ||||||||||| | || |||  | || || ||||| || || ||||||||||| |||||||| ||||||   | ||    
T  29967778 cctctcgaacaacctgcgtaattgataaattgcaaaagatgatctaaggttgaatgagaatctactcccaccactcctagccatgctcgcaccattggcc 29967877  T
Q  142 ataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagacc 241  Q
    ||||||| || |||||    ||   ||| ||||||||| |||||||||| |||  ||| || |  || |||||| ||||||| |||||||||||||  ||    
T  29967878 ataaagcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgcc 29967977  T
Q  242 acgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcc 341  Q
    | | || |||| |||  |||| |||||||||||||| |||| |||||  || ||||||||||| |||||||||||||||||||| |||||||  ||||||    
T  29967978 atggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaactcc 29968077  T
Q  342 a 342  Q
    |    
T  29968078 a 29968078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 4938247 - 4938174
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  4938247 ttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaa 4938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 18532653 - 18532714
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgttt 325  Q
    |||||||| ||||||||||  |||||||| ||||||||| ||||||| | ||||||||||||    
T  18532653 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgttt 18532714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7403675 - 7404007
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  7403675 aaacacaaagcaaccaaatcaagtggaaaaaagaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaagttgattgaga 7403774  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| ||||||||||||||||||| ||||   | |||||| || || ||||| || ||   ||| ||||||||| | |||||||| |||  ||||    
T  7403775 gtcgacccctaccactccgagccatgcccacaccaatggccataaggcactaaaagttggacaagacaaaaacaaatgattgacatcttcaacgttcccg 7403874  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  ||||||||| ||||||| |||||| ||||||  ||||| || |||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  7403875 catccagagacacacaaccgcgcctccaaacgtaaaatgccacggtttgccaaattcttttttgtaggtaaccgatccctcagaagtcgccaagcaagga 7403974  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||||| | |||| ||||| |||||||    
T  7403975 tagagactttgaaatgaacttgtttatgccaaa 7404007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 15739983 - 15740329
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || | ||||||||| || ||||| ||||||||||||||||| |||| ||| ||||| ||||||||    
T  15739983 aaacacaaagcaaccaaatcaagtggaagaaagaccgtctccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaagttgattgaga 15740082  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     |||||||| |||||||| |||||||| ||||||   | |||||| || |  |||||  | ||   ||| ||||||||| |||||||||  ||   |||     
T  15740083 atcgacccctaccactcctagccatgctcgcaccaatggccataaggcaccaaaagttagacaagacaaaaacaaatgattaacatctttaacattccca 15740182  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  |||||  | | || ||| |||||||||||||||||||| | || ||||| ||| |||||||    
T  15740183 cacccagaaacacacaaccgcgcctccaaaggtaaaatgccacggcttgtcaaattattttttgtaggtaaccgatctcgcaaaagtctccaagcaagga 15740282  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||| |||||||||||||||||||| |||||||  ||||||| ||||    
T  15740283 tagatactttgagaggaacctgtttatgccaaattaactccatatta 15740329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 19755024 - 19755370
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || |||| |||| | || ||||| |||||||||||||||||  ||| ||| ||||| ||||||||    
T  19755024 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccttctcaaacaacctgcgtaattaataaattgcaaacaatgatctgaagttgattgaga 19755123  T
Q  101 gtcgaccccca--ccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccc 198  Q
     |||||||| |  ||||||| |||||||||||||||   |||||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  ||    
T  19755124 ttcgacccctataccactcctagccatgcccgcaccattgaccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgctcc 19755223  T
Q  199 cgcaacttgagacacacgaccgcgcatccaaaggtaaaagac---cacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgc 295  Q
    | || |  || |||||| ||||||| ||||||||||| | |    |||| || |||| ||| |||||||||||||||||||| ||||| |||||||| ||    
T  19755224 cacatccagaaacacacaaccgcgcctccaaaggtaataaaatgtcacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagc 19755323  T
Q  296 aaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||    
T  19755324 aaggatagatactttgagaggaacctgtttatgccaaattaactcca 19755370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 19784782 - 19784436
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || |||| |||| | || ||||| |||||||||||||||||  ||| ||| ||||| ||||||||    
T  19784782 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccttctcaaacaacctgcgtaattaataaattgcaaacaatgatctgaagttgattgaga 19784683  T
Q  101 gtcgaccccca--ccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccc 198  Q
     |||||||| |  ||||||| |||||||||||||||   |||||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  ||    
T  19784682 ttcgacccctataccactcctagccatgcccgcaccattgaccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgctcc 19784583  T
Q  199 cgcaacttgagacacacgaccgcgcatccaaaggtaaaagac---cacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgc 295  Q
    | || |  || |||||| ||||||| ||||||||||| | |    |||| || |||| ||| |||||||||||||||||||| ||||| |||||||| ||    
T  19784582 cacatccagaaacacacaaccgcgcctccaaaggtaataaaatgtcacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagc 19784483  T
Q  296 aaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||||    
T  19784482 aaggatagatactttgagaggaacctgtttatgccaaattaactcca 19784436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 47686273 - 47685949
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || | |||||| || || |||||||||||||||||||||| ||||| ||| ||||| ||||||||    
T  47686273 aaacacaaagcaaccaaatcaagtgaaagaaagaccgtcaccctcttgaacaacctgcataattaataaattgcaccaaatgatctgaagttgattgaga 47686174  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| | |||  ||||||||   | |||||| || || ||||| |  ||   ||| |||||| ||| ||||||||||||   |||     
T  47686173 gtcgacccctaccactcctaaccaatcccgcaccatcggccataatgcactaaaagttgcacaagacaaaaacaaacgagaaacatcttcgacattccca 47686074  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || |||||  ||||| || |||| ||| | |||||||||||||||||| |||| ||||||||| |||||||    
T  47686073 catccagaaacacataaccgctcctccacagataaaatgccacggtttgccaaattatgttttgtaggtaaccgatctctcaaaagtcgccaagcaagga 47685974  T
Q  301 tagaaactttgagaggaacctgttt 325  Q
    |||| ||||||||||||||||||||    
T  47685973 tagatactttgagaggaacctgttt 47685949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 20788657 - 20788491
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||||||||||||||||||       |||||  |||||||||| || ||| |||||||||||||||||||||||| ||| ||||| ||||||||    
T  20788657 aaacacaaagtaaccaaatcaagtgaaaaaa-gatcgttgccctctcgaacaacctacataattaataaattgcaacaaatgatctgaagttgattgaga 20788559  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacacca 168  Q
    ||||||||| |||||||| |||||||| ||||||   | |||||| ||||| ||||| || |||||||    
T  20788558 gtcgaccccgaccactcctagccatgctcgcaccaatggccataaggcgctaaaagttggacacacca 20788491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 377
Target Start/End: Complemental strand, 1828709 - 1828542
Alignment:
Q  210 acacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactt 309  Q
    |||||| ||||||| |||||||||||||  ||||| || |||| |||  ||||||||||||||| ||| | ||  |||| ||| ||||||||||| ||||    
T  1828709 acacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattagtttttgtaggtaacctatctcgcaatagtctccaagcaaggatagatactt 1828610  T
Q  310 tgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggttgctcctgtgatgtc 377  Q
    |||||||||||||||| |||||||  ||||||| |||| || | |   |||| |||||||||||||||    
T  1828609 tgagaggaacctgtttatgccaaattaactccatattatgatgtaactggggctgctcctgtgatgtc 1828542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 23642969 - 23642637
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  23642969 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 23642870  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || |||||||| | |||   |||||||   | |||||| || |  ||||| |  ||   ||| |||||||||||||||||||||||   |||     
T  23642869 gtcgacacctaccactcctaaccaatgccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatccca 23642770  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  |  || ||  ||||| | |||| || || ||  |||||||| |||| |||   |||||||||||||||||||||||  |||||||| |||||||    
T  23642769 catccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaagga 23642670  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||||||||| |||||||| |||||||    
T  23642669 tagagactttgagagggacctgtttatgccaaa 23642637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 47418825 - 47418898
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  47418825 ttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaa 47418898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 13271010 - 13270937
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  13271010 ttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaa 13270937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 12697838 - 12697907
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||    
T  12697838 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaa 12697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 55725816 - 55725723
Alignment:
Q  249 gccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| ||||| |||||||||||| ||||||||||  || ||||| |||||||| |||||||| |||||||| ||||| |||||||  |||||||    
T  55725816 gccaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactcca 55725723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 13271269 - 13271152
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  13271269 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 13271170  T
Q  101 gtcgacccccaccactcc 118  Q
    |||||| || ||||||||    
T  13271169 gtcgacacctaccactcc 13271152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 45472824 - 45472746
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  ||||||||  |||||||||||||||| | |||||||||||| |||||||  |||||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactcca 45472746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 160069 - 159954
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||  ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  160069 aaacacaaaacaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 159970  T
Q  101 gtcgacccccaccact 116  Q
    |||||| || ||||||    
T  159969 gtcgacacctaccact 159954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 375
Target Start/End: Original strand, 8361126 - 8361236
Alignment:
Q  265 taggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggttg 364  Q
    ||||||| |||| |||||| ||||||||  |||||||||||||||| |  ||||||||||| |||||||  ||||||| |||  || ||| | | |||||    
T  8361126 taggtaaacgattcctcagcagtcgccaaacaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatgaacatgaggttg 8361225  T
Q  365 ctcctgtgatg 375  Q
     ||||||||||    
T  8361226 ttcctgtgatg 8361236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 20002750 - 20002828
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  || ||||| |||| |||||||||||| | | |||||||||| |||||||  |||||||    
T  20002750 gtaggtaaacgatccctcaacagccgccaagcaatgatagaaacttttaaaagaacctgtttatgccaaattaactcca 20002828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 2822152 - 2822039
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  | |||||| ||| |||  |||||||| ||||| |||||||||||||| |  ||||||| |||  || ||||| | ||||    
T  2822152 gtaggtaagcgatccctcaacaatcgccaagcatggactgaaacttttagaggtacctgtttgtgccagattaactccatattttgatgaatatgaggtt 2822053  T
Q  364 gctcctgtgatgtc 377  Q
    | |||| |||||||    
T  2822052 gttcctatgatgtc 2822039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42927893 - 42928234
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  42927893 aaacacaaagcaaccaaatcaagtggaaaaatgaacgtcgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaagttgattgaga 42927992  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| ||||||||||||||||||||||||   |  ||||| || || ||||| || ||   ||||||||||||| | |||||||| |||  ||||    
T  42927993 gtcgacccctaccactccgagccatgcccgcaccaatggtcataaggcactaaaagttggacatgacaagaacaaatgattgacatcttcaacgttcccg 42928092  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  ||||||||| ||||| | ||||| |||||||  ||||  || | || ||| |||||||||| |||||||||||||||||| |||||  ||||||    
T  42928093 catccagagacacacaaccgcacctccaagggtaaaatgccacagtttgtcaaattattttttgtagttaaccgatccctcagaagccgccaaacaagga 42928192  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| |||||||||||||||||||| | |||||  |||||||    
T  42928193 tagagactttgagaggaacctgtttataccaaattaactcca 42928234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 342
Target Start/End: Complemental strand, 28536015 - 28535712
Alignment:
Q  39 cgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcag 138  Q
    ||||||||||| || || |||||||||||||||||||  |||| ||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||   |    
T  28536015 cgccctctcgaacaaccagcataattaataaattgcacaaaatgatctgaagttgattgagagtcaacccctaccactccaagccatgcccgcaccattg 28535916  T
Q  139 accataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaag 238  Q
     |||||| || || ||||| |  ||   ||| |||||||||   |||||||| ||   ||| ||||  || ||||||  | |||| |||||||||||||     
T  28535915 gccataaggcactaaaagttgcacaagacaaaaacaaatgatcgacatcttctacattcccacaaccagaaacacacatctgcgcctccaaaggtaaaat 28535816  T
Q  239 accacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaac 338  Q
     ||||| || |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||  |||    
T  28535815 gccacggtttgccaaattattttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaac 28535716  T
Q  339 tcca 342  Q
    ||||    
T  28535715 tcca 28535712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 19255501 - 19255159
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       ||||| |||  |||||| || ||||| ||||||||||||||||| |||| ||| ||||| | ||||||    
T  19255501 aaacacaaagcaaccaaatcaagtggaaaaatgatcgtcgcaatctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaagttgtttgaga 19255402  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     |||||||| ||||||||||||||||||||||||   | |||||| || |  ||||| || ||   ||||||||||||| | |||||||| |||  ||||    
T  19255401 atcgacccctaccactccgagccatgcccgcaccaatgtccataaggcaccaaaagttggacaagacaagaacaaatgattgacatcttcaacgtgcccg 19255302  T
Q  201 caacttgagacacacgaccgcgc-atccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagg 299  Q
    || |  | ||||||| |||||||  ||||| || | ||  |||| ||| |||| ||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  19255301 catccagtgacacacaaccgcgcgctccaagggaataatgccacaatttgccaaattattttttgtaggtaaccgatccctcagaaaccgccaagcaagg 19255202  T
Q  300 atagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||| |||||||||| || |||||| |||||||  |||||||    
T  19255201 atagatactttgagagaaatctgtttatgccaaattaactcca 19255159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 39 - 323
Target Start/End: Complemental strand, 35984131 - 35983847
Alignment:
Q  39 cgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcag 138  Q
    ||||||||||| || ||||||||||||||||||||||  |||| ||| ||||| ||||||||||||||||| |||||||| || ||||||||||||   |    
T  35984131 cgccctctcgaacaacctgcataattaataaattgcataaaatgatctgaagttgattgagagtcgacccctaccactccaagtcatgcccgcaccattg 35984032  T
Q  139 accataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaag 238  Q
     |||||| || || ||||| |  ||   ||| ||||||||| | ||| |||| ||   ||| ||||   | |||||| ||||||| |||||||||||||     
T  35984031 gccataaggcactaaaagttgcacaagacaaaaacaaatgattgacaacttctacattcccacaaccaaaaacacacaaccgcgcctccaaaggtaaaat 35983932  T
Q  239 accacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgt 323  Q
      || | || |||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  35983931 gtcatggtttgccaaattattttttgtaggtaaccgattcctcagaagtcgccaagcaaggatagatactttgagaggaacctgt 35983847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 23238145 - 23238521
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || ||||||||||| || ||||| ||||||||||||||||| |||| |||||| || || |||||    
T  23238145 aaacacaaagcaaccaaattaagtggaagaaagaccgacgccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatcagacgttgaatgaga 23238244  T
Q  101 gtcgac-ccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggcccc 199  Q
     ||||| |||||||||||| |||||||| ||||||   | |||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  |||    
T  23238245 atcgactccccaccactcctagccatgctcgcaccattggccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttccc 23238344  T
Q  200 gcaacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagg 299  Q
     || |  || |||||| ||||||| ||||||| |||||  ||||| || |||| |||  |||| |||||||||||||| |||| ||||| ||| ||||||    
T  23238345 acatccagaaacacacaaccgcgcctccaaagctaaaatgccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaagg 23238444  T
Q  300 atagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggttgctcctgtgatgt 376  Q
    |||||||||||||||||||||| ||| |||||||  ||||||| |||| |  | |   |||||||||||||||||||    
T  23238445 atagaaactttgagaggaacctatttatgccaaattaactccatattatggtgtaactggggttgctcctgtgatgt 23238521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 8227788 - 8228134
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || ||||||||||| || ||||| ||||||||||||||||| |||| ||| || || || |||||    
T  8227788 aaacacaaagcaaccaaattaagtggaagaaagaccgacgccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaggttgaatgaga 8227887  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     ||||| ||||||||||| |||||||| ||||||   | |||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  | |     
T  8227888 atcgactcccaccactcctagccatgctcgcaccattggccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttctca 8227987  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||   |||| || |||| |||  |||| |||||||||||||| |||| ||||| ||| |||||||    
T  8227988 catccagaaacacacaaccgcgcctccaaaggtaaaatgtcacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaagga 8228087  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||| |||||||||||||||||||| || ||||  ||||||| ||||    
T  8228088 tagatactttgagaggaacctgtttatgtcaaattaactccatatta 8228134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 25824811 - 25824906
Alignment:
Q  39 cgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcacc 134  Q
    ||||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  25824811 cgccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaagttgattgagagtcgacccctaccactccaagccatgcccgcacc 25824906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 30732692 - 30732360
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||||||||||||||   |||| ||| ||||| ||| ||||    
T  30732692 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataattaataaattgctcaaaatgatctgaagttgatcgaga 30732593  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || ||||| || | |||  ||||||||   | | |||| || |  ||||| |  ||   ||| |||||||||| ||||||||||||   |||     
T  30732592 gtcgacacctaccacgcctaaccaatcccgcaccatcggctataatgcaccaaaagttgtacaagacaaaaacaaatgagaaacatcttcgacaatccca 30732493  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || || ||  |||||||| |||| |||   ||||||||||||||||||||||||||||||||| |||| ||    
T  30732492 catccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaaga 30732393  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  30732392 tagatactttgagaggaacctgtttatgccaaa 30732360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 12824962 - 12825293
Alignment:
Q  2 aacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagag 101  Q
    ||||||||| ||||||||||||||       || || ||||||||||| || |||||||||||||||||||||   |||| ||| ||||| ||| |||||    
T  12824962 aacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataattaataaattgctcaaaatgatctgaagttgatcgagag 12825061  T
Q  102 tcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgc 201  Q
    ||||| || ||||| || | |||  ||||||||   | |||||| || |  ||||| |  ||   ||| |||||||||| ||||||||||||   ||| |    
T  12825062 tcgacacctaccacgcctaaccaatcccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatcccac 12825161  T
Q  202 aacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggat 301  Q
    | |  || |||||  ||||| | |||| || || ||  |||||||| |||| |||   ||||||||||||||||||||||||||||||||| ||||||||    
T  12825162 atccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggat 12825261  T
Q  302 agaaactttgagaggaacctgtttgtgccaaa 333  Q
    | | |||||||||||||| ||||| |||||||    
T  12825262 acatactttgagaggaacttgtttatgccaaa 12825293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 27117539 - 27117207
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || ||  ||||||||||||||||||  |||| ||| ||||| ||||||||    
T  27117539 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaaccgacataattaataaattgcacaaaatgatctgaagttgattgaga 27117440  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| | |||  ||| ||||   | |||||| || |  ||||| |  ||   ||| |||||||||| ||||||||||||   |||     
T  27117439 gtcgacccctaccactcctaaccaatcccacaccatcggccataatgctccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacattccca 27117340  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || || ||  ||||| ||  ||| |||   |||||| |||||||| ||||||||||||||||| |||||||    
T  27117339 cagccagaaacacataaccgctcctccatagatagaatgccacggtttaccaaattaagttttgtgggtaaccggtccctcagaagtcgccaagcaagga 27117240  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  27117239 tagatactttgagaggaacctgtttatgccaaa 27117207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 31641512 - 31641614
Alignment:
Q  239 accacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaac 338  Q
    |||||| || |||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| | |||||||  |||    
T  31641512 accacggtttgccaaattattttttgtaggtaaccgatccctcagtagtctccatgcaaggatagaaacttt-agaggaacctgtgtatgccaaattaac 31641610  T
Q  339 tcca 342  Q
    ||||    
T  31641611 tcca 31641614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 42513741 - 42513814
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  42513741 ttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaa 42513814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 25857539 - 25857426
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  25857539 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaagaggtt 25857440  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  25857439 gttcctgtgatgtc 25857426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 377
Target Start/End: Original strand, 27767063 - 27767180
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaataggg 359  Q
    |||||||||||| ||||||||||  |||||||| ||||||||| ||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | |     
T  27767063 ttttgtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatga 27767162  T
Q  360 ggttgctcctgtgatgtc 377  Q
    ||||| ||||||||||||    
T  27767163 ggttgttcctgtgatgtc 27767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 33385489 - 33385376
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| |  ||||||||||| |||||||  ||||||| |||  || ||||| | ||||    
T  33385489 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatgaatatgaggtt 33385390  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  33385389 gttcctgtgatgtc 33385376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 10776789 - 10776867
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| |  ||||||||||| |||||||  |||||||    
T  10776789 gtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactcca 10776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 8300297 - 8300184
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  ||||||||  |||||||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  8300297 gtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 8300198  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  8300197 gttcctgtgatgtc 8300184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 42513482 - 42513599
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  42513482 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 42513581  T
Q  101 gtcgacccccaccactcc 118  Q
    |||||| || ||||||||    
T  42513582 gtcgacacctaccactcc 42513599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3418545 - 3418662
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||| ||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  3418545 aaacacaaagcaaccaaatcaaatggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 3418644  T
Q  101 gtcgacccccaccactcc 118  Q
    |||||| || ||||||||    
T  3418645 gtcgacacctaccactcc 3418662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 12820327 - 12820213
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||| ||       || || ||||||||||| || |||||||||||||||||||||   |||| ||| ||||| ||| ||||    
T  12820327 aaacacaaagcaaccaaatcaaatggaagaaagaccgtcgccctctcgaacaacctgcataattaataaattgctcaaaatgatctgaagttgatcgaga 12820228  T
Q  101 gtcgacccccaccac 115  Q
    |||||| || |||||    
T  12820227 gtcgacacctaccac 12820213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 33169683 - 33169761
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||||||||| |||||||| |  ||||| ||||  ||||| ||||| | ||| |||||||||||||||| ||||||||    
T  33169683 gtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactcca 33169761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 342
Target Start/End: Original strand, 27795469 - 27795586
Alignment:
Q  225 tccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtt 324  Q
    ||||| |||||||  |||||||| |||| ||||  ||| ||||| || ||||||||||  |  ||||| |||| ||  | |||||||||||| |||||||    
T  27795469 tccaacggtaaaatgccacgatttgccaaattggctttagtaggcaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctgtt 27795568  T
Q  325 tgtgccaaaccaactcca 342  Q
    ||||||| || |||||||    
T  27795569 tgtgccagactaactcca 27795586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 12820068 - 12820036
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgcca 292  Q
    ||||||||||||||||||||||| |||||||||    
T  12820068 ttttgtaggtaaccgatccctcataagtcgcca 12820036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 39 - 343
Target Start/End: Original strand, 9922401 - 9922705
Alignment:
Q  39 cgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcag 138  Q
    ||||||||||| || ||||||||||||||||||||||  |||| ||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||   |    
T  9922401 cgccctctcgaacatcctgcataattaataaattgcactaaatgatctgaagttgattgagagtcaacccctaccactccaagccatgctcgcaccaatg 9922500  T
Q  139 accataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaag 238  Q
     |||||| || || ||||| |  ||   ||| ||||||||| | |||||||| ||   ||| ||||  || ||||||  |||||| |||| ||||||||     
T  9922501 gccataaggcactaaaagttgcacaagacaaaaacaaatgattgacatcttctacattcccacaaccagaaacacacatccgcgcctccagaggtaaaat 9922600  T
Q  239 accacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaac 338  Q
     ||||| || |||| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||  |||    
T  9922601 gccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaac 9922700  T
Q  339 tccaa 343  Q
    |||||    
T  9922701 tccaa 9922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 13396150 - 13396491
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || |||| |||| | || ||||| ||||||||||||||||   ||| ||| ||||| ||||||||    
T  13396150 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccttctcaaacaacctgcgtaattaataaattgcagacaatgatctgaagttgattgaga 13396249  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     |||||||| |||||||| |||||||||||||||   | |||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  |||     
T  13396250 ttcgacccctaccactcctagccatgcccgcaccattggccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttccca 13396349  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  ||||| || |||| ||| |||||||||||||||||||| ||||| |||||||| |||||||    
T  13396350 catccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaagga 13396449  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| |||||||||||||| ||||| |||||||  |||||||    
T  13396450 tagatactttgagaggaacttgtttatgccaaattaactcca 13396491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 32266326 - 32266672
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || ||||||||||| || ||||| ||||||||||||||||| |||| ||| || || || |||||    
T  32266326 aaacacaaagcaaccaaattaagtggaagaaagaccgacgccctctcgaacaacctgcgtaattaataaattgcaaaaaatgatctgaggttgaatgaga 32266425  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     ||||| ||||||||||| |||||||| ||||||   | ||| || || || |||||    ||   ||| ||||||||| |||||||||| |||  |||     
T  32266426 atcgactcccaccactcctagccatgctcgcaccattggccacaatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttccca 32266525  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||  ||||| || |||| |||  |||| |||||||||||||| |||| ||||| ||| |||||||    
T  32266526 catccagaaacacacaaccgcgcctccaaaggtaaaatgccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaagga 32266625  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||| |||||||||||||||||||| |||||||  ||||||||||||    
T  32266626 tagatactttgagaggaacctgtttatgccaaattaactccaaatta 32266672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41665747 - 41665406
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       ||||| |||| |||| | || ||||| ||||||||||||||||   ||| ||| ||||| ||||||||    
T  41665747 aaacacaaagcaaccaaatcaagtggaagaaagatcgtcgccttctcaaacaacctgcgtaattaataaattgcagacaatgatctgaagttgattgaga 41665648  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
     || ||||| |||||||| |||||||||||||||   | |||||| || || |||||    ||   ||| ||||||||| |||||||||| |||  |||     
T  41665647 ttcaacccctaccactcctagccatgcccgcaccattggccataatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttccca 41665548  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||| ||||||| |||||||||||||   || | || |||| ||| ||||||||||||||| |||| || || | |||||| |||||||    
T  41665547 catccagaaacacacaaccgcgcctccaaaggtaaaatgtcatggtttgccaaattattttttgtaggtaactgatctcttaggaatcgccaagcaagga 41665448  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||| |||||||||||||||||||| |||||||  |||||||    
T  41665447 tagatactttgagaggaacctgtttatgccaaattaactcca 41665406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 8299565 - 8299911
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  8299565 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 8299664  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || |||||||| | |||   |||||||   | |||||| || |  ||||| |  ||   ||| |||||||||||||||||||||||   |||     
T  8299665 gtcgacacctaccactcctaaccaatgccgcaccatcggccataatgcaccaaaagttgcacaggacaaaaacaaatgagtaacatcttcgacaatccca 8299764  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  |  |||||  | ||| | |||| || || ||  |||||||| |||| |||   |||||||||||||||||||||||| |||||||| |||||||    
T  8299765 catccagcaacacataatcgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaagga 8299864  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||| ||||||||||| |||||||| |||||||  || |||||||||    
T  8299865 tagatactttgagagggacctgtttatgccaaattaagtccaaatta 8299911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 171865 - 172197
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || || |||||||||||||||||||  |||| ||| ||||| ||||||||    
T  171865 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaaccggcataattaataaattgcacaaaattatctgaagttgattgaga 171964  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    ||||||||| |||||||| | |||  ||||||||   | |||||| |||   ||||| |  ||   ||| |||||||||| ||||||||||||    ||     
T  171965 gtcgacccctaccactcctaaccaatcccgcaccatcggccataatgcgtcaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacattacca 172064  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || || ||   |||| ||  ||| |||   |||||| |||||||| ||||||||||||||||| |||||||    
T  172065 cagccagaaacacataaccgctcctccatagatagaatgtcacggtttaccaaattaagttttgtgggtaaccggtccctcagaagtcgccaagcaagga 172164  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  172165 tagatactttgagaggaacctgtttatgccaaa 172197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7924148 - 7924480
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || ||  |||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  7924148 aaacacaaagcaaccaaatcaagtggaagaaagaccgttgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 7924247  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || |||||||| | |||   |||||||   | |||||| || |  ||||| |  ||   ||| |||||||||||||||||||||||   |||     
T  7924248 gtcgacacctaccactcctaaccaatgccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatccca 7924347  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  |  || ||  ||||| | |||| || || ||  |||||||| |||| |||   |||||||||||||||||||||||  |||||||| |||||||    
T  7924348 catccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaagga 7924447  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||||||||| |||||||| |||||||    
T  7924448 tagagactttgagagggacctgtttatgccaaa 7924480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 13200133 - 13200261
Alignment:
Q  249 gccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattag 348  Q
    |||| ||||| |||||||||||| ||||||||||  ||  |||| |||||||| |||||||| |||||||||||||| |||||||| ||||||| |||      
T  13200133 gccaaattgtattttgtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatatttt 13200232  T
Q  349 gaagaatagggggttgctcctgtgatgtc 377  Q
    || ||| | | ||||| ||||||||||||    
T  13200233 gatgaacatgaggttgttcctgtgatgtc 13200261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 20824321 - 20824434
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  20824321 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 20824420  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  20824421 gttcctgtgatgtc 20824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 17699507 - 17699585
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| |  ||||||||||| |||||||  |||||||    
T  17699507 gtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactcca 17699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 32567643 - 32567517
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || |||||||| || || ||||||||||||||||||||||| |||| ||| || || || |||||    
T  32567643 aaacacaaagcaaccaaattaagtggaagaaagaccgacgccctcttgaacaacctgcataattaataaattgcaaaaaatgatctgaggttgaatgaga 32567544  T
Q  101 gtcgacccccaccactccgagccatgc 127  Q
     ||||| ||||||||||| ||||||||    
T  32567543 atcgactcccaccactcctagccatgc 32567517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 20496846 - 20496963
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  20496846 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 20496945  T
Q  101 gtcgacccccaccactcc 118  Q
    |||||| || ||||||||    
T  20496946 gtcgacacctaccactcc 20496963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 2170367 - 2170480
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||   ||||||| ||||||||||||||||| | |||||||||||| ||||| |  ||||||| |||  || ||| | | ||||    
T  2170367 gtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggtt 2170466  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  2170467 gttcctgtgatgtc 2170480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 37434157 - 37434270
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||| ||||| ||||| | |||||| ||||| |||||||  ||||||| |||  || ||| | | ||||    
T  37434157 gtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatgaacatgaggtt 37434256  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  37434257 gttcctgtgatgtc 37434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 34137078 - 34137011
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgcca 331  Q
    |||||||| |||||| ||| ||| ||||| ||||| ||||| ||||||||||| |||||||| |||||    
T  34137078 gtaggtaaacgatccatcataagccgccaagcaagaatagagactttgagaggtacctgtttatgcca 34137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 2529901 - 2529958
Alignment:
Q  254 attgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttg 311  Q
    ||||| |||||||||||| ||||||||||  || ||||| |||||||| |||||||||    
T  2529901 attgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaactttg 2529958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 342
Target Start/End: Complemental strand, 13879641 - 13879524
Alignment:
Q  225 tccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtt 324  Q
    ||||| |||||||  |||||||| |||| ||||  ||| |||||||| ||||||||||  |  ||||| |||| ||  | |||||||||||| |||| ||    
T  13879641 tccaacggtaaaatgccacgatttgccaaattggctttagtaggtaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctatt 13879542  T
Q  325 tgtgccaaaccaactcca 342  Q
    ||||||| || |||||||    
T  13879541 tgtgccagactaactcca 13879524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 43270470 - 43270542
Alignment:
Q  259 tttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgcca 331  Q
    |||| ||||| || |||||| |||  |||||||| | ||||||||||||||| | |||||||||||| |||||    
T  43270470 ttttagtaggcaaacgatccttcaacagtcgccaagtaaggatagaaacttttaaaggaacctgtttatgcca 43270542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 63 - 342
Target Start/End: Original strand, 41206840 - 41207119
Alignment:
Q  63 ttaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggc 162  Q
    |||||||||||||| |||| ||| ||||| |  |||||||| ||||| |||||||||||||||||||||| |   | |||||| || |  ||||| || |    
T  41206840 ttaataaattgcaaaaaatgatctgaagttgtctgagagtcaacccctaccactccgagccatgcccgcatcaatggccataaggcaccaaaagttggac 41206939  T
Q  163 acaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttt 262  Q
    |   ||||||||||||| | |||||||| |||  |||||| |  | ||||||| ||||||| ||||| || | ||  |||||||| |||| ||| |||||    
T  41206940 aagacaagaacaaatgattgacatcttcaacgtgcccgcatccagtgacacacaaccgcgcctccaagggaataatgccacgatttgccaaattattttt 41207039  T
Q  263 tgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||  |||||||    
T  41207040 tgtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactcca 41207119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 4551931 - 4552263
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||||||||||||||   |||| ||| ||||| ||| ||||    
T  4551931 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataattaataaattgctcaaaatgatctgaagttgatcgaga 4552030  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || ||||| || | |||  ||||||||   |  ||||| || |  ||||| |  ||   ||| |||||||||| ||||| ||||||   |||     
T  4552031 gtcgacacctaccacgcctaaccaatcccgcaccatcggtcataatgcaccaaaagttgcacaagacaaaaacaaatgagaaacattttcgacaatccca 4552130  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || || ||  |||||||| |||| |||   ||||||||||||||||||||||||||||||||| |||||||    
T  4552131 catccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaagga 4552230  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||| |||||||||| ||| |||||||    
T  4552231 tagatactttaagaggaacctatttatgccaaa 4552263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 12645551 - 12645639
Alignment:
Q  254 attgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    ||||| |||||||||||| ||||||||||  || ||||| |||||||| |||||||| |||| ||||||||| |||||||  |||||||    
T  12645551 attgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagagaaacctgtttatgccaaattaactcca 12645639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 15917624 - 15917736
Alignment:
Q  209 gacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaact 308  Q
    ||||||| ||||| | |||||||| | || ||||||||| |||| |||   |||||||||||| ||||||||||| |||| ||| ||||||||| | |||    
T  15917624 gacacacaaccgcacttccaaaggaataataccacgatttgccaaattaacttttgtaggtaaacgatccctcagcagtccccaagcaaggatacagact 15917723  T
Q  309 ttgagaggaacct 321  Q
    || ||||||||||    
T  15917724 ttcagaggaacct 15917736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 40176693 - 40176806
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |  ||||| |||||||  |||||||| ||||| |||||||||||||| || ||||||| |||  || ||||| | ||||    
T  40176693 gtaggtaaacgatccctcaacaaccgccaagcaaggactgaaacttttagaggtacctgtttgtgccagactaactccatattttgatgaatatgaggtt 40176792  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  40176793 gttcctgtgatgtc 40176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 347
Target Start/End: Original strand, 3067 - 3360
Alignment:
Q  54 cctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctga 153  Q
    ||||| ||||| ||||||||||| |||| ||| ||  |||| ||||||||||| ||||||||||| | |||||| ||||||   | |||||| || || |    
T  3067 cctgcgtaattgataaattgcaaaaaatgatctgagatagaatgagagtcgactcccaccactcctaaccatgctcgcaccattggccataatgcactaa 3166  T
Q  154 aagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccag 253  Q
    ||||    ||   ||| ||||||||| |||||||||| |||  ||| || |  || |||||| ||||||| |||||||||||||  ||| | || ||||     
T  3167 aagttacacaagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaatgccatggtttgccaa 3266  T
Q  254 attgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaatta 347  Q
    |||| |||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| |||||||||||||| |||||||  ||||||| ||||    
T  3267 attgcttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatatta 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 51052242 - 51052574
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||||||||||||||   |||| ||| ||||| ||| ||||    
T  51052242 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataattaataaattgctcaaaatgatctgaagttgatcgaga 51052341  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || ||||| || | |||  ||||||||   | |||||| || |  ||||| |  ||   ||| |||||||||| ||||||||||||   |||     
T  51052342 gtcgacacctaccacgcctaaccaatcccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagaaacatcttcgacaatccca 51052441  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  || |||||  ||||| | |||| || || ||  |||||||| |||| |||   ||||||||||||||||||||||||||||||||| |||||||    
T  51052442 catccagaaacacataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaagga 51052541  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| |||||||||||||||||||| |||||||    
T  51052542 tagatactttgagaggaacctgtttatgccaaa 51052574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 11909224 - 11909151
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||    
T  11909224 ttttgtaggtaaccgatccctcagaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaa 11909151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 35541050 - 35541143
Alignment:
Q  240 ccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||| |||| ||| | |||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  35541050 ccacgatttgccaaattatgttttgtgggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaa 35541143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 6050624 - 6050697
Alignment:
Q  260 ttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  6050624 ttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaa 6050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 6259619 - 6259712
Alignment:
Q  41 ccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcacc 134  Q
    ||||||||| || ||| | ||||||||||||||||| |||| ||| ||||| |||||||| |||||||| |||||||| |||||||| ||||||    
T  6259619 ccctctcgaacaacctacgtaattaataaattgcaaaaaatgatctgaagttgattgagaatcgacccctaccactcctagccatgctcgcacc 6259712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 16917924 - 16917811
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactccaaattaggaagaatagggggtt 363  Q
    |||||||| ||||||||||  |||||||| ||||||||||||||||| | |||||||||||| |||||||  ||||||| |||  || ||| | | ||||    
T  16917924 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaagaggtt 16917825  T
Q  364 gctcctgtgatgtc 377  Q
    | ||||||||||||    
T  16917824 gttcctgtgatgtc 16917811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 35540811 - 35540928
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  35540811 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 35540910  T
Q  101 gtcgacccccaccactcc 118  Q
    |||||| || ||||||||    
T  35540911 gtcgacacctaccactcc 35540928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 26059653 - 26059752
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || | ||||||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  26059653 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcaccctctcgaacaacctgcataattaataaattgcaaaaaatgatctgaagttgattgaga 26059752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 43388392 - 43388470
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaaccaactcca 342  Q
    |||||||| ||||||||||  | |||||| ||||||||||||||||| | |||||||||||| |||||||  |||||||    
T  43388392 gtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactcca 43388470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4842166 - 4842299
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || |||| |||| | || ||||| |||| ||||||||||    ||| ||| ||||| ||||||||    
T  4842166 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccttctcaaacaacctgcgtaatgaataaattgctgacaatgatctgaagttgattgaga 4842265  T
Q  101 gtcgacccccaccactccgagccatgcccgcacc 134  Q
     |||||||| |||||||| |||||||||||||||    
T  4842266 ttcgacccctaccactcctagccatgcccgcacc 4842299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 47623192 - 47623123
Alignment:
Q  264 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||||||| || ||||||| ||| ||||| ||||| ||||| ||||||||||| |||||||| |||||||    
T  47623192 gtaggtaagcggtccctcaaaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaa 47623123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13352076 - 13352180
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| |||||||| |||||       || || ||| ||||||| || ||||||||||||||||||| ||| |||| ||| ||||| |||||| |    
T  13352076 aaacacaaagcaaccaaataaagtgaaaaaatgaacgtcgctctctcgaacaacctgcataattaataaattacaaaaaatgatctgaagttgattgata 13352175  T
Q  101 gtcga 105  Q
    |||||    
T  13352176 gtcga 13352180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 333
Target Start/End: Complemental strand, 11548 - 11251
Alignment:
Q  36 cgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgagagtcgacccccaccactccgagccatgcccgcaccg 135  Q
    |||||||||||||| || || ||||||||||||||||||   |||| ||| ||||| ||||||||||||||||| |||||||| | |||  ||||||||     
T  11548 cgccgccctctcgaacaaccggcataattaataaattgctcaaaatgatctgaagttgattgagagtcgacccctaccactcctaaccaatcccgcacca 11449  T
Q  136 cagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccgcaacttgagacacacgaccgcgcatccaaaggtaa 235  Q
      | |||||| || |  ||||| |  ||   ||| |||||||||  ||||| ||||||   ||| || |  || |||||  ||||| | |||| || ||     
T  11448 tcggccataatgctccaaaagttgcacaagacaaaaacaaatgaaaaacattttcgacattcccacatccagaaacacataaccgctcctccacagatag 11349  T
Q  236 aagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtttgtgccaaa 333  Q
    ||  ||||| || |||| |||   ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  11348 aatgccacggtttgccaaattaagttttgtaggtaaccgatccctgagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaa 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 106221 - 105889
Alignment:
Q  1 aaacacaaagtaaccaaatcaagtgnnnnnnngatcgccgccctctcgagcaccctgcataattaataaattgcaacaaatcatcagaagtagattgaga 100  Q
    |||||||||| ||||||||||||||       || || ||||||||||| || |||||||||| |||||||||||  || | ||| ||||| ||||||||    
T  106221 aaacacaaagcaaccaaatcaagtggaagaaagaccgtcgccctctcgaacaacctgcataatgaataaattgcacaaagtgatctgaagttgattgaga 106122  T
Q  101 gtcgacccccaccactccgagccatgcccgcaccgcagaccataaagcgctgaaagtcgggcacaccaagaacaaatgagtaacatcttcgacggccccg 200  Q
    |||||| || |||||||| | |||   |||||||   | |||||| || |  ||||| |  ||   ||| |||||||||||||||||||||||   |||     
T  106121 gtcgacacctaccactcctaaccaatgccgcaccatcggccataatgcaccaaaagttgcacaagacaaaaacaaatgagtaacatcttcgacaatccca 106022  T
Q  201 caacttgagacacacgaccgcgcatccaaaggtaaaagaccacgattcgccagattgttttttgtaggtaaccgatccctcagaagtcgccatgcaagga 300  Q
    || |  |  || ||  ||||| | |||| || || ||  |||||||| |||| |||   |||||||||||||||||||||||  |||||||| |||||||    
T  106021 catccagcaacgcataaccgctcctccacagatagaatgccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaagga 105922  T
Q  301 tagaaactttgagaggaacctgtttgtgccaaa 333  Q
    |||| ||||||||||| |||||||| |||||||    
T  105921 tagagactttgagagggacctgtttatgccaaa 105889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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