View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_18 (Length: 382)
Name: NF10151_low_18
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 373
Target Start/End: Original strand, 8133700 - 8134069
Alignment:
| Q |
4 |
tcacctggcccaccgttaccagctgatgccgaaacaaaaactccggcatcagaagctccaaaagcacctatagcaataacgtcaagatggtacggaacaa |
103 |
Q |
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| T |
8133700 |
tcacctggcccaccgttaccagctgatgcagaaacaaaaactccggcatcagaagctccaaaagcacctatagcaataacgtcaagatggtacggaacaa |
8133799 |
T |
|
| Q |
104 |
caacaccaccgacactgagagaaaccacgtcaacaccgtcagccacggcggcgtcaaacgccgcaagtatatcggagtcaaaacaaccacccgtccagca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133800 |
caacaccaccgacactgagagaaaccacgtcaacaccgtcagccacggcggcgtcaaacgccgcaagtatatcggagtcaaaacaaccacccgtccagca |
8133899 |
T |
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| Q |
204 |
aactttatacaccgcgagacgagctttcggagccataccggcggcgacacctttagcataacccaaagtactcgccggagaaacatacctcccggcggcg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8133900 |
aactttatacaccgcgagacgagctttcggagccataccggcggcgacacctttagcataacccaaagtactcgccggagaaacatacctcccggcggcg |
8133999 |
T |
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| Q |
304 |
attgaagcagtgtgagttccatgtccgtcggagtctctagcagaacgaaactcagttgtttcattcatct |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8134000 |
attgaagcagtgtgagttccatgtccgtcggagtctctagcagaacgaaactcagttgtttcattcatct |
8134069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 28525995 - 28525937
Alignment:
| Q |
310 |
gcagtgtgagttccatgtccgtcggagtctctagcagaacgaaactcagttgtttcatt |
368 |
Q |
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|||||||| ||||||||||| | ||||||||||| |||||| | |||||||||||||| |
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| T |
28525995 |
gcagtgtgcgttccatgtccttgagagtctctagcggaacgataatcagttgtttcatt |
28525937 |
T |
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