View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_21 (Length: 371)
Name: NF10151_low_21
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 53754227 - 53754575
Alignment:
| Q |
5 |
gtgacagtaattttttataaatgactcagttattacgggacggagcgagtataaaagaaggcaagttaattaattgtatcataccgtatggttggacttg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754227 |
gtgacaataattttttataaatgactcagttattatgggacggagcgagtataaaagaaggcaagttaattaattgtatcataccgtatggttggacttg |
53754326 |
T |
|
| Q |
105 |
taccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53754327 |
taccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaaccaccag |
53754426 |
T |
|
| Q |
205 |
ctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggca |
304 |
Q |
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| T |
53754427 |
ctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatggggca |
53754526 |
T |
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| Q |
305 |
tgttgttcccgaaacaccatcttcgaatgagttccttctctgctggatc |
353 |
Q |
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| T |
53754527 |
tgttgttcccgaaacaccatcttcgaatgagttccttctctgctggatc |
53754575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 9218072 - 9218039
Alignment:
| Q |
23 |
aaatgactcagttattacgggacggagcgagtat |
56 |
Q |
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| T |
9218072 |
aaatgactcagttattacgggacggagggagtat |
9218039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 47496112 - 47496072
Alignment:
| Q |
15 |
ttttttataaatgactcagttattacgggacggagcgagta |
55 |
Q |
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| T |
47496112 |
ttttttacaaatgactcagttattacaggacggagggagta |
47496072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 86 - 351
Target Start/End: Original strand, 8571696 - 8571961
Alignment:
| Q |
86 |
taccgtatggttggacttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatccta |
185 |
Q |
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|||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| || ||| ||| || || |||||||| || ||||| || || ||| |
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| T |
8571696 |
taccgtgtggttggacttgtaccaatctccaatgaggacagtgtaatcaccagcgggatcatcgaagggaacgggaattcttggcctacttagaattcta |
8571795 |
T |
|
| Q |
186 |
atgcctccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcc |
285 |
Q |
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|| ||||||||||||||||| ||||| || ||||| |||||||| || || || || || ||||||||||| || |||||||| || |||||||||||| |
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| T |
8571796 |
attcctccaaaaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttct |
8571895 |
T |
|
| Q |
286 |
tccctggtgggatggggcatgttgttcccgaaacaccatcttcgaatgagttccttctctgctgga |
351 |
Q |
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| T |
8571896 |
ttccaggtggaatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgctgga |
8571961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 28940695 - 28940921
Alignment:
| Q |
101 |
cttgtaccaatcaccaataaggacagtgtaatctccagctggttcagggaaagggactggaattctaggtctactgagtatcctaatgcctccaaaacca |
200 |
Q |
| |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| || ||||| || ||||| || || || | ||| |||||||||| |
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| T |
28940695 |
cttgtaccaatcaccaataagaaatgtgtaatcattagctggttcagggaaaggaacaggaatccttggtctgctaaggattttgatggatccaaaacca |
28940794 |
T |
|
| Q |
201 |
ccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttcctccctggtgggatgg |
300 |
Q |
| |
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|||||||| || ||||| || ||||||||||| ||| | ||||||||||||||||| || |||||||| | |||||||||||| |||| || ||||||| |
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| T |
28940795 |
ccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttcccaggagggatgg |
28940894 |
T |
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| Q |
301 |
ggcatgttgttcccgaaacaccatctt |
327 |
Q |
| |
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| |||||||| || |||| ||||||| |
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| T |
28940895 |
gacatgttgtaccataaactccatctt |
28940921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 17346429 - 17346341
Alignment:
| Q |
196 |
aaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttc |
284 |
Q |
| |
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||||||| ||||| || |||||||| || || ||||||||| || |||| ||||| ||||| || |||||||||||||| ||||||||| |
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| T |
17346429 |
aaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttc |
17346341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 42015364 - 42015289
Alignment:
| Q |
192 |
ccaaaaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaa |
267 |
Q |
| |
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||||| |||||||||||| ||||||| || || ||||||||| |||| |||||||| |||||||||||||||| |
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| T |
42015364 |
ccaaatccaccagctgctctttgaaaattaagtgaaggaaagtagaaaaaacttccaatctgatccttcacttgaa |
42015289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 42051830 - 42051870
Alignment:
| Q |
15 |
ttttttataaatgactcagttattacgggacggagcgagta |
55 |
Q |
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||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
42051830 |
ttttttacaaatggctcagttattacgggacggagggagta |
42051870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 33921641 - 33921681
Alignment:
| Q |
15 |
ttttttataaatgactcagttattacgggacggagcgagta |
55 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
33921641 |
ttttttaaaaatggctcagttattacgggacggagggagta |
33921681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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