View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_3 (Length: 577)
Name: NF10151_low_3
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 52286778 - 52287327
Alignment:
| Q |
18 |
agtctcacatgttatggtagataaactcaaataagtcaattgctagaactttaattaaatgttgacaaccatgaatgtttatgaaaatttgtattagtga |
117 |
Q |
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| T |
52286778 |
agtctcacatgttatggtagataaactcaaataagtcaattgctcgaactttaattaaatgttgacaaccatgaatgtttatgaaaatttgtattagtga |
52286877 |
T |
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| Q |
118 |
actggatatatctttcatcacaagtttactttctaattggaaagacaatgcatgaaaaatacaagacatgcaaagctacttttcaagttaacatttgctg |
217 |
Q |
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| T |
52286878 |
actggatatatctttcatcacaaggttactttctaattggaaagaccatgcatgaaaaatacaagacatgcaaagctacttttcaagttaacatttgctg |
52286977 |
T |
|
| Q |
218 |
agacttcttgcagtgtgcaattgctccttggattgagttttctatctctgaacttgcactgctgcaccttttgagaagctggtgagtttgatgacatcca |
317 |
Q |
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| T |
52286978 |
agacttcttgcagtgtgcaattgctccttggattgagttttctatctctgaacttgcactgctgcaccttttgagaagctggtgagtttgatgacatcca |
52287077 |
T |
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| Q |
318 |
tatgatttgtttgaaagtgaaaatgacgatgaaccagatatcgaagaatttgatgatgacttgtttcctgaaagaagtttgattccaacagagaatgatc |
417 |
Q |
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| T |
52287078 |
tatgatttgtttgaaagtgaaaatgacgatgaaccagatatcgaagaatttgatgatgacttgtttcctgaaagaagtttgattccaacagagaatgatc |
52287177 |
T |
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| Q |
418 |
ttctgtgatgatgattacttccatcttcactgcttttttctttgtatcctctcatgacagaaatcgaagaatgataactttgactttgaatttggccata |
517 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
52287178 |
ttctg---tgatgattacttccatcttcactgcttttttctttgtatcctctcatgacagaaatcgaagactgataactttgcctttgaatttggccata |
52287274 |
T |
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| Q |
518 |
tggatttttatttgctccttgaacatgcttattcaaaatttccctagcctttg |
570 |
Q |
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| T |
52287275 |
tggatttttatttgctccttgaacatgcttattcaaaatttccctagcttttg |
52287327 |
T |
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