View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_30 (Length: 314)
Name: NF10151_low_30
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 42079518 - 42079259
Alignment:
| Q |
18 |
aatataactttatcctattctgctgtcatgttcaggctataaagcatctttcttcagaactattcaactcttgtcnnnnnnnnnnnnnnnnnnncatcag |
117 |
Q |
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| T |
42079518 |
aatataactttatcctattctgctgtcatattcaggctataaagcatctttcttcagaactattcagctcttgtcaaaaaaaaaaaaa-------atcag |
42079426 |
T |
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| Q |
118 |
aactattccgacttcattatcaagatcacccaccaaaaaagacaactcttaaatatcaattcgttcgctttttaatgtgatgtttgccaacacaacttac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42079425 |
aactattccgacttcattatcaagatcacccaccaaagaagacaacccttaaatatcaattcgttcgctttttaatgccatgtttgccaacacaacttac |
42079326 |
T |
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| Q |
218 |
ttttttaaaggttctaaacttccctttaaagaacgaccatccaacctgcataattgtccttgtccta |
284 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42079325 |
ttttttaaaggttctaaacttccctttaaagaactaccatccaacctgcataattgtccttgtccta |
42079259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 42081844 - 42081686
Alignment:
| Q |
112 |
catcagaactattccgacttcattatcaagatcacccaccaaaaaagacaactcttaaatatcaattcgttcgctttttaatgtgatgtttgccaacaca |
211 |
Q |
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| T |
42081844 |
catcagaactactccgacttcattatcaggatcatccaccaaaaaagacaaaccttaaatgt--------------tttaatgtcgtgttttccaacaca |
42081759 |
T |
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| Q |
212 |
acttacttttttaaaggttctaaacttccctttaaagaacgaccatccaacctgcataattgtccttgtccta |
284 |
Q |
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| T |
42081758 |
gcttacttttttaaaggttttaaacttccctttaaagaacgaccaaccaacccacataactgtccatgtccta |
42081686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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