View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_low_33 (Length: 303)
Name: NF10151_low_33
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_33 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 8752324 - 8752612
Alignment:
| Q |
1 |
ccttcctagttttaagattttttaattacaagaaaagaagaagaaaagtaaactgaaaacaaagattaagcatgagagtatgaaactcccatgacatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8752324 |
ccttcctagttttaagattttttaattacaagaaaagaagaagaaaagaaaactgaaaacaaagatcaagcatgagagtatgaaactcccatgacatcca |
8752423 |
T |
|
| Q |
101 |
caagaaggactaactgaagcttaatcgaaggattgttgagaatcaccaagttaacaagaagctttagcactaagtttagcgaaaacgtctgcactcatat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8752424 |
caagaagaactaactgaagcttaatcgaaggattgttgagaatcaccaagttaacaagaagctttagcaccaagtttagcgaaaacgtctgccctcatat |
8752523 |
T |
|
| Q |
201 |
ttctttttcaaaaagtatgcagaagtcgtacagtccaatccttgaccaagagaaaggtttgaagggaatatgaataaacaaataatgtct |
290 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8752524 |
ttatttctcgaaaagtatgcagaagtcgtacagtccaatccttgaccaagagaaaggtttgaagggaatatgaat-aacaaataatgtct |
8752612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 8734866 - 8734951
Alignment:
| Q |
54 |
tgaaaacaaagattaagcatgagagtatgaaactcccatgacatccacaagaaggactaactgaagcttaatcgaaggattgttga |
139 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |||| |||||||||| |
|
|
| T |
8734866 |
tgaaaataaagactaagcacaagagtatgaaactcccatgacatctacaagaaggaataaatgaagctcaatctgtggattgttga |
8734951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 22218 - 22030
Alignment:
| Q |
56 |
aaaacaaagattaagcatgagagtatgaaactcccatgacatccacaagaaggactaactgaagcttaatcgaaggattgttgagaatcaccaagttaac |
155 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||| || |
|
|
| T |
22218 |
aaaataaagactaagcatgagagtatgaaactcatatggcatccacaagaaggaccaactgaggctcaatcg-aggattgttgagaatcaccaagtt-ac |
22121 |
T |
|
| Q |
156 |
aagaagctttagcactaagtttagcgaaaacgtctgcactcatatttctttttcaaaaagtatgcagaagtcgtacagtccaatccttgac |
246 |
Q |
| |
|
|| |||| |||||| |||||||| | ||||| | ||||| |||| | || || ||||||||| |||||| || |||||||| ||||| |
|
|
| T |
22120 |
tagtagctctagcaccaagtttagtgtgaacgtatccactcctattaccttctcgaaaagtatgataaagtcgcaccgtccaatcattgac |
22030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 244
Target Start/End: Complemental strand, 29712169 - 29711980
Alignment:
| Q |
55 |
gaaaacaaagattaagcatgagagtatg-aaactcccatgacatccacaagaaggactaactgaagcttaatcgaaggattgttgagaatcaccaagtta |
153 |
Q |
| |
|
||||||||||| |||||| |||| ||| ||||| ||||| |||| |||| ||||| ||| |||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
29712169 |
gaaaacaaagactaagcacaagagcatggaaacttccatggcatctacaaaaaggaataattgaagcccaattggaagattgttgagaatcaccaagtta |
29712070 |
T |
|
| Q |
154 |
acaagaagctttagcactaagtttagcgaaaacgtctgcactcatatttctttttcaaaaagtatgcagaagtcgtacagtccaatccttg |
244 |
Q |
| |
|
| |||||| |||| | ||||||||||| ||||||||| |||||||| | | || ||||||||| ||||||| || |||||||||||| |
|
|
| T |
29712069 |
tta-gaagctctagcgcgaagtttagcgagaacgtctgccctcatattaccgtctcgaaaagtatgttgaagtcgcacggtccaatccttg |
29711980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 43097372 - 43097275
Alignment:
| Q |
130 |
ggattgttgagaatcaccaagttaacaagaagctttagcactaagtttagcgaaaacgtctgcactcatatttctttttcaaaaagtatgcagaagtcg |
228 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| | |||||| ||||||||||| ||| ||| ||||||| || | || |||||||||||| ||||||| |
|
|
| T |
43097372 |
ggattgttgagaatcaccaagtta-ctagaagttctagcaccaagtttagcgagaacttctacactcatgttaccttctcaaaaagtatgttgaagtcg |
43097275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 26746908 - 26746766
Alignment:
| Q |
56 |
aaaacaaagattaagcatgagagtatgaaactcccatgacatccacaagaaggactaactgaagcttaatcgaaggattgttgagaatcaccaagttaac |
155 |
Q |
| |
|
|||||||||| || ||| |||||||| || | ||||| ||||||||||||| |||| ||||||| ||||||| ||||||||| ||||| || ||| || |
|
|
| T |
26746908 |
aaaacaaagactaggcacgagagtatagaatttccatggcatccacaagaagtactagttgaagctcaatcgaaagattgttgacaatcatcatgtt-ac |
26746810 |
T |
|
| Q |
156 |
aagaagctttagcactaagtttagcgaaaacgtctgcactcata |
199 |
Q |
| |
|
| ||| | ||||| || |||| ||| |||||||||||||||| |
|
|
| T |
26746809 |
taaaagttctagcatcaaatttaacgagaacgtctgcactcata |
26746766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 46286673 - 46286548
Alignment:
| Q |
76 |
gagtatgaaactcccatgacatccacaagaaggactaactgaa-gcttaatcgaaggatt--gttgagaatcaccaagttaacaagaagctttagcacta |
172 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| ||||| || ||| |||||||||||| ||||||||||||||| ||| | ||||||| || ||| | |
|
|
| T |
46286673 |
gagtatgaaactc--atgacatatgcaagaaggaataactaaaagctcaatcgaaggattatgttgagaatcaccaaatta-ctagaagctctatcacca |
46286577 |
T |
|
| Q |
173 |
agtttagcgaaaacgtctgcactcatatt |
201 |
Q |
| |
|
| ||| ||| |||||||||||||||||| |
|
|
| T |
46286576 |
aatttgacgagaacgtctgcactcatatt |
46286548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University