View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_35 (Length: 296)
Name: NF10151_low_35
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 48671969 - 48672264
Alignment:
| Q |
1 |
ataagcaaagacttaattgaaattggtggcgaagctctcaaaactaacatcacaacactaggaccattggtcctacccttttcagaacagcttattttct |
100 |
Q |
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| T |
48671969 |
ataagcaaagacttaattgaaattggtggcgaagctctcaaaactaacatcacaacactaggaccattggtcctacccttttcagaacagcttattttct |
48672068 |
T |
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| Q |
101 |
ttgctacattagtgtggaggaactggtttggtggtggaaaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaactagcttt |
200 |
Q |
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| T |
48672069 |
ttgctacattagtgtggaggaactggtttggtggtggaaaatctgataaaaattcaccatcatcaaacaagccatacattcctaactacaaactagcttt |
48672168 |
T |
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| Q |
201 |
tgagcatttttgtgtgcatgctgctagcaaaaccattcttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaat |
296 |
Q |
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| T |
48672169 |
tgagcatttttgtgtgcatgctgccagcaaaaccattcttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaat |
48672264 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 15239322 - 15239368
Alignment:
| Q |
31 |
gaagctctcaaaactaacatcacaacactaggaccattggtcctacc |
77 |
Q |
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| T |
15239322 |
gaagcactcaaaacaaacatcacaacattaggaccattagtcctacc |
15239368 |
T |
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