View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10151_low_37 (Length: 288)
Name: NF10151_low_37
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43469329 - 43469598
Alignment:
| Q |
1 |
ataaccaaaaccaatattttgtgtaactataaaaccatgtttagtctttacaaatgaatgaatcactcatcagaccctgtcaatacatcaaccataacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43469329 |
ataaccaaaaccaatattttgtgtaactataaaaccatgtttagtctttacaaatgaatgaatcactcatcagaccctgtcaatacatcaaccataacct |
43469428 |
T |
|
| Q |
101 |
tcataacactcactctattttgcaaagacaatatgtaattagctgtctctctaaaaagtccatccaacccaatagattcatcactatttggtataagtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43469429 |
tcataacactcactctattttgcaaagacagtatgtaattagctgtctctctaaaaagtccatccaacccaatagattcatcactatttggtataagtct |
43469528 |
T |
|
| Q |
201 |
cttcaatgttctcacacgtctctgaattccatatgaacctcttcttctcttcattaaagttcttctcttc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43469529 |
cttcaatgttctcacacgtctctgaattccatatgaacctcttcttctcttcattaaagttcttctcttc |
43469598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University