View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_4 (Length: 575)
Name: NF10151_low_4
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 32 - 564
Target Start/End: Original strand, 33169015 - 33169527
Alignment:
| Q |
32 |
acacaaagcatgacagtcttaacggcgatgccttttacttctacaccaacaagccagcatctcaatgcaccacaagccgattcaaaccaggtacaatggt |
131 |
Q |
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| T |
33169015 |
acacaaagcatgacagtcttaacggcgatgccttttacttctataccaacaagccagcatctcaatgcaccacaagccgattcaaaccaggtacaatggt |
33169114 |
T |
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| Q |
132 |
ataggtcacaacgtggttgactcaaatgtaatattgatgcctctttttcgcataagcttaatagaacaagtataggtatgtacttgcgagatgaggatga |
231 |
Q |
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| T |
33169115 |
ataggtcacaacttggttgactcaaatgtaatattgatgcctctttttcgcataagctaaatagaacaagtataggtatgtacttgcgagatgaggatga |
33169214 |
T |
|
| Q |
232 |
tgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtgggggaagcgttgggtttgttcatgcgcttcaatggaccagtgata |
331 |
Q |
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| T |
33169215 |
tgcttttgtttaggccaaaacaatgtgtgttactccgttgtgtattgtgaatgtggtggaa-----------------gcgcttcaatggactagtgat- |
33169296 |
T |
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| Q |
332 |
tgcatgcaatttgataatattgatttcgtgcttgattgcaaaaccccaacaaatgcctt-actgaatcagattgatgttatagaacttggttatgttatc |
430 |
Q |
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| T |
33169297 |
---atgcaatttgataatgttgatttcatgcttgattgcaaaaccccaacaaatgccttcactgaatcagattgatgttatagaacttggttatgttatc |
33169393 |
T |
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| Q |
431 |
acaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaataaatgaggccactcatattttaacaggggtagc |
530 |
Q |
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| T |
33169394 |
acaatttgtaggaagttctttgccgctcagtttacaaactttaaggttgatttaaaagaagacaaacaaatgaggccactcatattttaacaggggtagc |
33169493 |
T |
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| Q |
531 |
catgttatcaactagtctcaccgcttattttcat |
564 |
Q |
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| T |
33169494 |
catgttatcaactagtctcaccgcttattttcat |
33169527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 21511224 - 21511433
Alignment:
| Q |
60 |
tgccttttacttctacaccaacaagccagcatctcaatgcaccacaagccgattcaaaccaggtacaatggtataggtcacaacgtggttgactcaaatg |
159 |
Q |
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| T |
21511224 |
tgccttctacttctggaccaacaagccaacatcttaatgagccgcaaaccattacggaccaggtacgttggtagaggttgcaatgtggtcaactcaaatg |
21511323 |
T |
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| Q |
160 |
taatattgatgcctctttttcgcataagcttaatagaacaagtatag-gtatgtacttgcgagatgaggatgatgcttttgtttaggccaaaacaatgtg |
258 |
Q |
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| T |
21511324 |
taatattgatgcttctttttcgaaccagctgaacaaaacatgtctagtttatgtgcttgcaagataaggagggtgtgtttgtcttggccaaaacaatgtg |
21511423 |
T |
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| Q |
259 |
tgttactccg |
268 |
Q |
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| T |
21511424 |
tgttactccg |
21511433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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