View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_low_42 (Length: 250)

Name: NF10151_low_42
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_low_42
NF10151_low_42
[»] chr7 (5 HSPs)
chr7 (19-154)||(32955469-32955604)
chr7 (1-103)||(48577696-48577798)
chr7 (202-240)||(32954367-32954405)
chr7 (202-240)||(32955653-32955691)
chr7 (204-240)||(27981429-27981465)
[»] chr1 (5 HSPs)
chr1 (19-107)||(50671946-50672034)
chr1 (1-107)||(10463136-10463242)
chr1 (1-107)||(43732790-43732896)
chr1 (202-240)||(50674141-50674179)
chr1 (202-240)||(50671804-50671842)
[»] chr3 (3 HSPs)
chr3 (1-107)||(5913250-5913356)
chr3 (202-240)||(5913424-5913462)
chr3 (27-74)||(33294495-33294542)
[»] chr8 (2 HSPs)
chr8 (1-107)||(25864329-25864435)
chr8 (1-70)||(32327272-32327341)
[»] chr2 (1 HSPs)
chr2 (1-74)||(203034-203107)
[»] chr6 (1 HSPs)
chr6 (27-74)||(5723358-5723405)
[»] scaffold0755 (1 HSPs)
scaffold0755 (1-70)||(4604-4673)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 32955469 - 32955604
Alignment:
Q  19 cggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcgagaaagaaaacttgcgttt 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32955469 cggagggcgatggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctggaagcgagaaagaaaacttgcgttt 32955568  T
Q  119 tctgttttctaggaaccaaaaccggagggcgttgtg 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  32955569 tctgttttctaggaaccaaaaccggagggcgttgtg 32955604  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48577696 - 48577798
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcga 100  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  48577696 tgatgttcaacagtgcggcggagggcggtggttgaagcttatggcggcggacgacgaagaaaaccgatggtggtttctggatcgcgttttctgaaagcga 48577795  T
Q  101 gaa 103  Q
    |||    
T  48577796 gaa 48577798  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 32954405 - 32954367
Alignment:
Q  202 ataagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32954405 ataagccttgacacgtgtcaaaatatgattggtcctatg 32954367  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 32955653 - 32955691
Alignment:
Q  202 ataagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  32955653 ataagccttgacacatgttaaaatatgattggtcctatg 32955691  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 27981429 - 27981465
Alignment:
Q  204 aagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||||||||||| |||||||| |||||    
T  27981429 aagccttgacacgtgtcaaaatttgattggttctatg 27981465  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 50672034 - 50671946
Alignment:
Q  19 cggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcgagaaagaa 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  50672034 cggagggcggtggttgatggttatggcggcggacggcgaagaaaaccggtggtggtttctggatcgcgtttgctggaagcgagaaagaa 50671946  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10463242 - 10463136
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcga 100  Q
    |||||| | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  10463242 tgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggtttctggatcgcgtttgctggaagcga 10463143  T
Q  101 gaaagaa 107  Q
    |||||||    
T  10463142 gaaagaa 10463136  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 43732896 - 43732790
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcga 100  Q
    |||||| | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  43732896 tgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggtttctggatcgcgtttgctggaagcga 43732797  T
Q  101 gaaagaa 107  Q
    |||||||    
T  43732796 gaaagaa 43732790  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 50674141 - 50674179
Alignment:
Q  202 ataagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  50674141 ataagccttgacacgtgtcaaaatctgattggtcctatg 50674179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 50671842 - 50671804
Alignment:
Q  202 ataagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  50671842 ataagccttgacacgtgtcaaaatctgattgatcctatg 50671804  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5913250 - 5913356
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcga 100  Q
    |||||||| |||||| |  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||| ||    
T  5913250 tgatgttcaacagtgtggtggagggtggtggttgatggttatggcggcggacggcgaagaaaaccggtggtgggttctggatcgcgtttgctggaaggga 5913349  T
Q  101 gaaagaa 107  Q
    |||||||    
T  5913350 gaaagaa 5913356  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 5913424 - 5913462
Alignment:
Q  202 ataagccttgacacgtgtcaaaatatgattggtcctatg 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5913424 ataagccttgacacgtgtcaaaatatgattggtcctatg 5913462  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 33294495 - 33294542
Alignment:
Q  27 ggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt 74  Q
    |||||||||||||||| || || ||| |||||||||||||||||||||    
T  33294495 ggtggttgaaggttattgcagcagacagcgaagaaaaccggtggtggt 33294542  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 25864329 - 25864435
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcga 100  Q
    |||||| | |||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||  |||||||||||| || |||||| ||| ||||||    
T  25864329 tgatgtacaacagtgcggcggagggcggtggttgatggttacggcggcagacggcgaagaaaaccaatggtggtttctggattgcgtttgctggaagcga 25864428  T
Q  101 gaaagaa 107  Q
    |||||||    
T  25864429 gaaagaa 25864435  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32327341 - 32327272
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtgg 70  Q
    ||||||||||| ||||| |||||||||||||||| |||| ||||| || | | |||||||||||| ||||    
T  32327341 tgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccagcgaagaaaaccagtgg 32327272  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 203107 - 203034
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt 74  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||  |||||||||||||  ||||||||    
T  203107 tgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacaagtggtggt 203034  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 5723405 - 5723358
Alignment:
Q  27 ggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt 74  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5723405 ggtggttgaaggttattgcggcagacggtgaagaaaaccggtggtggt 5723358  T

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Target: scaffold0755 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4673 - 4604
Alignment:
Q  1 tgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtgg 70  Q
    ||||||||||| ||||| |||||||||||||||| |||| ||||| || | || || |||||||| ||||    
T  4673 tgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccgacgtagaaaaccagtgg 4604  T

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