View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_43 (Length: 250)
Name: NF10151_low_43
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 52 - 250
Target Start/End: Original strand, 17352968 - 17353166
Alignment:
| Q |
52 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttcatatacgtggaagtctc |
151 |
Q |
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| T |
17352968 |
aaataccagatggaaaatattactagataattcatgactacgtactatgttcatacaatttaacaagattcttatataatttcatatacgtggaagtctc |
17353067 |
T |
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| Q |
152 |
aatccaagtcacatgaaaattgagaatattgatctatcattgcaagtcctaatcccaaaaataaataaaaatccaaggaaacaaacacaacatccctgc |
250 |
Q |
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| T |
17353068 |
aatccaagtcacatgaaaattgagaatattgatctatcattgcaagtcctaatcccaaaaataaataaaaatccaaggaatcaaacacaacgtccctgc |
17353166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 17352894 - 17352929
Alignment:
| Q |
15 |
ggataatagaagcaataaccagtgaatatagcttca |
50 |
Q |
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| T |
17352894 |
ggataatagaagcaataaccagtgaatatagcttca |
17352929 |
T |
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