View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_low_48 (Length: 241)

Name: NF10151_low_48
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_low_48
NF10151_low_48
[»] chr5 (18 HSPs)
chr5 (19-174)||(43297742-43297898)
chr5 (132-240)||(42346296-42346404)
chr5 (131-240)||(6556576-6556685)
chr5 (131-232)||(26752063-26752164)
chr5 (81-146)||(6556726-6556792)
chr5 (193-241)||(43297695-43297743)
chr5 (72-122)||(26747694-26747744)
chr5 (70-117)||(42346476-42346523)
chr5 (81-146)||(26752205-26752271)
chr5 (72-117)||(4722332-4722377)
chr5 (132-180)||(7263269-7263317)
chr5 (70-117)||(39939959-39940006)
chr5 (70-128)||(11822227-11822285)
chr5 (71-117)||(16930210-16930256)
chr5 (72-117)||(1696716-1696760)
chr5 (72-117)||(17646640-17646685)
chr5 (72-117)||(36348567-36348612)
chr5 (70-122)||(23067691-23067743)
[»] chr4 (27 HSPs)
chr4 (131-241)||(46513847-46513957)
chr4 (131-240)||(32719117-32719226)
chr4 (135-233)||(17930910-17931009)
chr4 (132-240)||(1593682-1593789)
chr4 (132-216)||(12024617-12024700)
chr4 (70-146)||(32719267-32719344)
chr4 (71-155)||(1593821-1593905)
chr4 (72-117)||(17931084-17931129)
chr4 (136-241)||(35431353-35431458)
chr4 (70-117)||(43887431-43887478)
chr4 (71-117)||(11284240-11284286)
chr4 (72-122)||(32715269-32715319)
chr4 (72-117)||(40732467-40732512)
chr4 (70-147)||(45936604-45936681)
chr4 (71-121)||(51025988-51026038)
chr4 (70-146)||(12024499-12024576)
chr4 (72-117)||(21168417-21168462)
chr4 (72-117)||(49790617-49790662)
chr4 (72-117)||(51029612-51029657)
chr4 (71-146)||(35431477-35431553)
chr4 (69-117)||(38193361-38193409)
chr4 (70-121)||(20855789-20855840)
chr4 (72-122)||(46355379-46355429)
chr4 (72-122)||(46518344-46518394)
chr4 (72-117)||(20902517-20902562)
chr4 (71-147)||(22438581-22438658)
chr4 (70-150)||(38194539-38194619)
[»] chr7 (23 HSPs)
chr7 (134-240)||(1298923-1299029)
chr7 (72-240)||(25567555-25567724)
chr7 (131-240)||(47863867-47863975)
chr7 (133-240)||(45166383-45166490)
chr7 (134-239)||(43376470-43376576)
chr7 (161-233)||(40794949-40795021)
chr7 (70-146)||(47863779-47863855)
chr7 (137-240)||(46794175-46794278)
chr7 (136-240)||(40440679-40440783)
chr7 (71-147)||(1299072-1299149)
chr7 (132-187)||(6272563-6272618)
chr7 (70-121)||(42736958-42737009)
chr7 (71-121)||(42734398-42734448)
chr7 (86-122)||(1295958-1295994)
chr7 (132-192)||(42014480-42014540)
chr7 (70-117)||(27030640-27030687)
chr7 (72-146)||(45075208-45075283)
chr7 (71-117)||(2206305-2206351)
chr7 (132-216)||(45075324-45075407)
chr7 (71-117)||(42027036-42027082)
chr7 (72-122)||(47868492-47868542)
chr7 (72-117)||(20708207-20708252)
chr7 (72-117)||(20876251-20876296)
[»] chr3 (34 HSPs)
chr3 (131-240)||(33942583-33942692)
chr3 (133-239)||(32428624-32428730)
chr3 (132-240)||(2282215-2282323)
chr3 (132-240)||(12515156-12515264)
chr3 (132-240)||(51545383-51545491)
chr3 (71-146)||(33942733-33942809)
chr3 (145-233)||(40465696-40465784)
chr3 (72-146)||(32428773-32428848)
chr3 (70-117)||(42329098-42329145)
chr3 (72-117)||(40465593-40465638)
chr3 (71-146)||(51545240-51545316)
chr3 (69-155)||(4117815-4117902)
chr3 (72-117)||(14633427-14633472)
chr3 (70-146)||(50459615-50459691)
chr3 (136-180)||(177537-177581)
chr3 (72-148)||(47642761-47642837)
chr3 (70-117)||(46412468-46412515)
chr3 (71-117)||(30191664-30191710)
chr3 (72-153)||(49272720-49272802)
chr3 (134-187)||(18912168-18912221)
chr3 (72-117)||(48098160-48098205)
chr3 (70-117)||(10054306-10054353)
chr3 (72-150)||(21196417-21196496)
chr3 (159-240)||(4117941-4118023)
chr3 (132-170)||(48165155-48165193)
chr3 (71-128)||(10283731-10283788)
chr3 (72-117)||(11379780-11379825)
chr3 (72-117)||(18942600-18942645)
chr3 (71-147)||(30715873-30715950)
chr3 (72-117)||(47760933-47760978)
chr3 (73-117)||(21196604-21196648)
chr3 (71-119)||(37222838-37222886)
chr3 (132-192)||(45035012-45035072)
chr3 (74-150)||(54922552-54922628)
[»] chr1 (31 HSPs)
chr1 (131-241)||(28865744-28865855)
chr1 (134-240)||(7407316-7407422)
chr1 (131-240)||(45475383-45475491)
chr1 (132-239)||(36354662-36354769)
chr1 (132-240)||(46191836-46191945)
chr1 (71-146)||(7407466-7407542)
chr1 (88-128)||(48138670-48138710)
chr1 (72-117)||(46191749-46191794)
chr1 (72-192)||(18883847-18883967)
chr1 (132-192)||(22093401-22093461)
chr1 (130-185)||(27285933-27285988)
chr1 (72-122)||(7402843-7402892)
chr1 (198-240)||(48138818-48138860)
chr1 (60-117)||(12789633-12789690)
chr1 (72-117)||(15356395-15356440)
chr1 (69-106)||(36354544-36354581)
chr1 (72-117)||(37780037-37780082)
chr1 (94-146)||(48139412-48139465)
chr1 (70-117)||(18239449-18239496)
chr1 (132-191)||(27105744-27105803)
chr1 (70-117)||(34814477-34814524)
chr1 (131-170)||(48139332-48139371)
chr1 (72-122)||(14441122-14441171)
chr1 (72-117)||(27105627-27105672)
chr1 (69-122)||(28861922-28861975)
chr1 (69-114)||(34815689-34815734)
chr1 (72-117)||(35585103-35585148)
chr1 (71-128)||(45475550-45475607)
chr1 (132-173)||(48138771-48138812)
chr1 (70-106)||(28865937-28865973)
chr1 (70-122)||(51164586-51164638)
[»] chr6 (12 HSPs)
chr6 (137-239)||(31860564-31860666)
chr6 (132-240)||(29230683-29230791)
chr6 (74-146)||(22868407-22868480)
chr6 (135-192)||(32264097-32264154)
chr6 (177-233)||(22865934-22865990)
chr6 (132-192)||(5620659-5620719)
chr6 (131-183)||(22868314-22868366)
chr6 (69-146)||(31860713-31860791)
chr6 (71-146)||(5620760-5620836)
chr6 (196-240)||(29268248-29268292)
chr6 (73-150)||(12398742-12398820)
chr6 (70-153)||(5613793-5613877)
[»] chr2 (18 HSPs)
chr2 (132-239)||(13331741-13331852)
chr2 (71-122)||(34522715-34522766)
chr2 (72-117)||(24108472-24108517)
chr2 (132-240)||(31173497-31173606)
chr2 (71-122)||(2121319-2121370)
chr2 (71-117)||(4425018-4425064)
chr2 (132-209)||(26394064-26394140)
chr2 (72-117)||(31297640-31297685)
chr2 (132-191)||(28654605-28654664)
chr2 (72-150)||(31298818-31298897)
chr2 (71-117)||(10361184-10361230)
chr2 (73-146)||(17112305-17112379)
chr2 (72-110)||(44037908-44037946)
chr2 (72-117)||(6975962-6976007)
chr2 (73-122)||(34519902-34519951)
chr2 (71-104)||(37180947-37180980)
chr2 (72-113)||(44074344-44074385)
chr2 (75-150)||(3259875-3259951)
[»] chr8 (26 HSPs)
chr8 (132-209)||(26702766-26702843)
chr8 (132-240)||(45120581-45120688)
chr8 (159-239)||(43610703-43610783)
chr8 (131-233)||(17443197-17443300)
chr8 (134-239)||(16583508-16583613)
chr8 (136-240)||(44322872-44322977)
chr8 (71-146)||(43610578-43610654)
chr8 (72-133)||(26702900-26702961)
chr8 (72-122)||(26701829-26701879)
chr8 (132-192)||(41270206-41270266)
chr8 (70-133)||(17443355-17443418)
chr8 (70-117)||(41362980-41363027)
chr8 (72-146)||(45120729-45120804)
chr8 (72-150)||(2809215-2809293)
chr8 (72-117)||(8036250-8036295)
chr8 (70-146)||(23231306-23231383)
chr8 (72-117)||(40678293-40678338)
chr8 (70-122)||(16583188-16583240)
chr8 (71-117)||(40494114-40494160)
chr8 (72-117)||(27641530-27641575)
chr8 (72-123)||(14737677-14737729)
chr8 (152-192)||(17732017-17732057)
chr8 (73-117)||(20495567-20495611)
chr8 (71-146)||(38032145-38032221)
chr8 (139-187)||(42095505-42095553)
chr8 (76-155)||(44323013-44323093)
[»] scaffold0006 (2 HSPs)
scaffold0006 (134-233)||(19088-19187)
scaffold0006 (70-150)||(18967-19048)
[»] scaffold1043 (1 HSPs)
scaffold1043 (70-189)||(2602-2722)
[»] scaffold0769 (1 HSPs)
scaffold0769 (71-122)||(751-802)
[»] scaffold0325 (1 HSPs)
scaffold0325 (197-230)||(6943-6976)
[»] scaffold0004 (2 HSPs)
scaffold0004 (69-150)||(127201-127283)
scaffold0004 (72-117)||(130567-130612)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 43297898 - 43297742
Alignment:
Q  19 tgacaagcatatatgctacacattacatgatccatttcgccacaatactgtaagaaaattgtttttctgacataggaaacttcctattgacacaagtaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  43297898 tgacaagcatatatgctacacattacatgatccatttcgccacaataccgtaagaaaattgcttttctgacatgggaaacttcctattgacacaagtaat 43297799  T
Q  119 ttacataattt-ccccagcggcagttaactgccattcacaccagttaacagaaccag 174  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  43297798 ttacataatttcccccagcgacagttaactgccgttcacaccagttaacagaaccag 43297742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 42346404 - 42346296
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42346404 ccagcggcatttaactgccgttcacaccaattaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcatgttttacctataatttcaaa 42346305  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  42346304 cgacaattc 42346296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 6556685 - 6556576
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  6556685 cccagcggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactggtttaacccaagaaatttgtcttattttacctataatttcaa 6556586  T
Q  231 acgtcaattc 240  Q
    | | ||||||    
T  6556585 atggcaattc 6556576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 26752164 - 26752063
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26752164 cccagcggcagttaactaccgctcacaccagttaacagaaccagtgcagtctgcactggtttagcccaagaaatttgtcctgttttacctataatttcaa 26752065  T
Q  231 ac 232  Q
    ||    
T  26752064 ac 26752063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 6556792 - 6556726
Alignment:
Q  81 ttttctgacataggaaacttcctattgacacaagtaatttacataa-tttccccagcggcagttaac 146  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  6556792 ttttttgacataggaaacttcctattgacacaagtaatttacataactgtccccagcggaagttaac 6556726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 43297743 - 43297695
Alignment:
Q  193 agcccaggaaatttgtcttgttttacctataatttcaaacgtcaattct 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43297743 agcccaggaaatttgtcttgttttacctataattttaaacgtcaattct 43297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 26747694 - 26747744
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  26747694 gaaaattgcttttttgacataggaaacttcctattgacacaagtaatttac 26747744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 42346523 - 42346476
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  42346523 aagaaaattgcttttctgacataggaaacttcttattgacacaagtaa 42346476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 26752271 - 26752205
Alignment:
Q  81 ttttctgacataggaaacttcctattgacacaagtaatttacataatttc-cccagcggcagttaac 146  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||||    
T  26752271 ttttttgacataggaaatttcctattgacacaagtaatttaaataattgctcccagcggccgttaac 26752205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 4722332 - 4722377
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  4722332 gaaaattgtttttctgacatagaatacttcctattgacacaagtaa 4722377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 7263317 - 7263269
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagt 180  Q
    ||||||||||||||||||| ||||||||||| ||||  |||||||||||    
T  7263317 ccagcggcagttaactgccgttcacaccagtaaacaagaccagtgcagt 7263269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 39939959 - 39940006
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||||||| |||||| | | |||||||||||||||||||||    
T  39939959 aagaaaattgtttttttgacattgaatacttcctattgacacaagtaa 39940006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11822285 - 11822227
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt 128  Q
    |||||||||| ||||||||||||| |||||||  | |||||||||||| | ||||||||    
T  11822285 aagaaaattgcttttctgacatagaaaacttcacaatgacacaagtaaatgacataatt 11822227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 16930210 - 16930256
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| ||||| || |||| |||||||||||||||||||||||    
T  16930210 agaaaattgcttttcagatatagaaaacttcctattgacacaagtaa 16930256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 1696760 - 1696716
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||    
T  1696760 gaaaattgcttttctgacattg-aaacttcctattgacacaagtaa 1696716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 17646685 - 17646640
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | ||||||| |||||||||||||    
T  17646685 gaaaattgcttttctgacatagaatacttcctgttgacacaagtaa 17646640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 36348567 - 36348612
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  36348567 gaaaattgcttttctgacatagaaaactacctattgtcacaagtaa 36348612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 23067743 - 23067691
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||||| ||||||||||| | ||| |||| |||||||||||||| ||||    
T  23067743 aagaaaattgcttttctgacattgaaaagttccaattgacacaagtaaattac 23067691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 46513847 - 46513957
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46513847 cccagcggcagttaactgccgttcacaccagttaacagaaccaatgcagtctgcactggtttagcccaggaaatttgtcatgttttacctataatttcaa 46513946  T
Q  231 acgtcaattct 241  Q
    ||| |||||||    
T  46513947 acggcaattct 46513957  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 32719226 - 32719117
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  32719226 cccagcggcagttaactgtcattcacaccagttaatagaaccaatgcagtctgcactggtttaacctaggaaatttgtctcgttttacttataatttcaa 32719127  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  32719126 acggcaattc 32719117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 17931009 - 17930910
Alignment:
Q  135 gcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagccc-aggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||| ||||||||| | ||| ||||||||||||||||||||||| | | |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  17931009 gcggaagttaactgtcgttcgcaccagttaacagaaccagtgcattattcactggtttagcccaaggaaatttgtcatgttttacctataatttcaaacg 17930910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 1593789 - 1593682
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    |||| |||||||||||||| ||||||||||| ||||  |||||||||||||||||| ||||   ||||||||||| ||||  ||||||||||||||||||    
T  1593789 ccagtggcagttaactgccgttcacaccagtaaacaagaccagtgcagtctgcactagttt-ttccaggaaatttttcttaatttacctataatttcaaa 1593691  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  1593690 cggcaattc 1593682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 12024617 - 12024700
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgtttt 216  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||   |||| ||||||||||||||||    
T  12024617 ccagcggcagttaactgccattcacaccagtaaacaagaccagtgcagtctccactggttt-ttccagaaaatttgtcttgtttt 12024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 32719344 - 32719267
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    |||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  32719344 aagaaaattgcttttttgacgtaggaaaattcctattgacacaagtaatttacataattgcccccagcggctgttaac 32719267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 1593905 - 1593821
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaactgccattca 155  Q
    ||||||||| ||||||||||||| |||||||  | |||||||||||| ||| |||||| ||||||||||||||||| ||| ||||    
T  1593905 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaaattatataattgccccagcggcagttaacagccgttca 1593821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 17931129 - 17931084
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  17931129 gaaaattgcttttctgacataggaaacttcctattgacacaagtaa 17931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 35431458 - 35431353
Alignment:
Q  136 cggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtc 235  Q
    |||||||||||||    |||||||||||||||| | |||||||   |||||||||||   |||  ||||||||| ||||||||||||||||||||||| |    
T  35431458 cggcagttaactgatgctcacaccagttaacagcatcagtgcaagttgcactggttttttccaaaaaatttgtcctgttttacctataatttcaaacggc 35431359  T
Q  236 aattct 241  Q
    ||||||    
T  35431358 aattct 35431353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 43887431 - 43887478
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  43887431 aagaaaattgtttttctgacatagaaaacttcctattgacaaaagtaa 43887478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 11284240 - 11284286
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  11284240 agaaaattgcttttctgacataggaaacttcctattgacataagtaa 11284286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 32715269 - 32715319
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  32715269 gaaaattgcttttttgacataggaaacttcctattgacacaaataatttac 32715319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 40732512 - 40732467
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  40732512 gaaaattgtttttctgacatagaatacttcctattgacacaagtaa 40732467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 45936604 - 45936681
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaact 147  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||| | || |  || ||||||||||| ||||||    
T  45936604 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgacgtttttaccccagcggcatttaact 45936681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 51025988 - 51026038
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaattta 121  Q
    ||||||||| |||| |||||||| | |||||||||||||||||||||||||    
T  51025988 agaaaattgcttttttgacatagaatacttcctattgacacaagtaattta 51026038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 12024499 - 12024576
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    |||||||||| ||||||||||  | ||||||||||||||||||||||| ||||  ||||  |||||||| ||||||||    
T  12024499 aagaaaattgattttctgacaatgaaaacttcctattgacacaagtaaattacccaattgcccccagcgacagttaac 12024576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 21168417 - 21168462
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  21168417 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 21168462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 49790617 - 49790662
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  49790617 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 49790662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 51029657 - 51029612
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  51029657 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 51029612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 35431553 - 35431477
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccc-cagcggcagttaac 146  Q
    |||| |||| ||||||||||||| |||||||  | ||| | ||||||||||||||||| ||| ||||||||||||||    
T  35431553 agaatattgcttttctgacatagaaaacttcacaatgatataagtaatttacataattgccctcagcggcagttaac 35431477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 38193361 - 38193409
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||  ||||||||||||| | |||||||||||||||||||||    
T  38193361 taagaaaattacttttctgacatagaatacttcctattgacacaagtaa 38193409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 20855840 - 20855789
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaattta 121  Q
    ||||||||||||||| | |||||| | ||||||||||| |||||||||||||    
T  20855840 aagaaaattgttttttttacatagaatacttcctattggcacaagtaattta 20855789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 46355379 - 46355429
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    ||||||||||||| |||||||  | |||||||||| |||||||||||||||    
T  46355379 gaaaattgtttttttgacatataatacttcctattaacacaagtaatttac 46355429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 46518394 - 46518344
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  46518394 gaaaattgcttttttgacatggaatacttcctattgacacaagtaatttac 46518344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 20902562 - 20902517
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||| ||||||    
T  20902562 gaaaattgcttttctgacatagaatacttcctattgacataagtaa 20902517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 22438658 - 22438581
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacat-aatttccccagcggcagttaact 147  Q
    ||||||||| |||| ||||| |||||  |||||||||||||||||||  ||||| |||  ||||||||| ||||||||    
T  22438658 agaaaattgcttttttgacaaaggaatgttcctattgacacaagtaaaatacataaatacccccagcggtagttaact 22438581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 38194619 - 38194539
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttc-cccagcggcagttaactgcc 150  Q
    |||||| |||||||| |||||||| | ||||||||||||||||||||| | ||  |||| | |||||||| |||||||||||    
T  38194619 aagaaagttgttttt-tgacatagaatacttcctattgacacaagtaaatgaccaaattactcccagcggtagttaactgcc 38194539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 1299029 - 1298923
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  1299029 agcggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactggtttagcccagaaaatttgtcatgttttacctataatttcaaacg 1298930  T
Q  234 tcaattc 240  Q
     ||||||    
T  1298929 gcaattc 1298923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 25567555 - 25567724
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcccc-agcggcagttaactgccattcacaccagttaacagaa 170  Q
    |||||||| ||||||||||||| |||||||  | ||| ||||||||||||||||||| |||| |||||||| ||||||||| ||||| ||||||||||||    
T  25567555 gaaaattgattttctgacatagaaaacttcacaatgatacaagtaatttacataattgcccctagcggcagctaactgccactcacatcagttaacagaa 25567654  T
Q  171 ccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtcaattc 240  Q
     |||||||||||||||||||||   | | ||||||| || ||||||||||||||||||||||| ||||||    
T  25567655 tcagtgcagtctgcactggttttttctaagaaatttatcctgttttacctataatttcaaacggcaattc 25567724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 47863867 - 47863975
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  47863867 cccagaggcagttaattgccgttcacaccagttaacagaaccagtgcagtctgcattggtttagcccaggaaatttgtc-tgttttacctataatttcaa 47863965  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  47863966 acggcaattc 47863975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 45166383 - 45166490
Alignment:
Q  133 cagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaac 232  Q
    ||||||||||||||||||  |||||||||||| ||||| |||||||| || |||||||||   |||||||||||||| ||||||||||||||||||||||    
T  45166383 cagcggcagttaactgccgctcacaccagttagcagaatcagtgcagcctacactggttttttccaggaaatttgtcctgttttacctataatttcaaac 45166482  T
Q  233 gtcaattc 240  Q
    | ||||||    
T  45166483 ggcaattc 45166490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 43376470 - 43376576
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactgg-tttagcccaggaaatttgtcttgttttacctataatttcaaac 232  Q
    |||||||||||||||||  |||||| |||||||||||||| ||||||||||||||| |||     |||||||||||||||||||||||||||||||||||    
T  43376470 agcggcagttaactgccgctcacacaagttaacagaaccaatgcagtctgcactggtttttttttaggaaatttgtcttgttttacctataatttcaaac 43376569  T
Q  233 gtcaatt 239  Q
    | |||||    
T  43376570 ggcaatt 43376576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 40795021 - 40794949
Alignment:
Q  161 gttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||    
T  40795021 gttaacagaaccagtgcaatctgcactgatttaacccaggaaatttgtcatgttttacctataattttaaacg 40794949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 47863779 - 47863855
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaac 146  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  47863779 aagaaaattgcttttttgacataggaagcttcctattgacacaagtaatttacataattgccccagccacagttaac 47863855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 46794278 - 46794175
Alignment:
Q  137 ggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtca 236  Q
    ||||||||||||||  || ||||||||| ||||| |||||||| ||||||||||||   |||| ||||||||| ||||||||||||||||||||| | ||    
T  46794278 ggcagttaactgccgctcccaccagttagcagaatcagtgcagcctgcactggttttttccagaaaatttgtcctgttttacctataatttcaaaaggca 46794179  T
Q  237 attc 240  Q
    ||||    
T  46794178 attc 46794175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 40440679 - 40440783
Alignment:
Q  136 cggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtc 235  Q
    |||||||||||||||  || ||| ||||| ||||| |||||||   |||||||||||   |||| ||||||||| ||||||||||||||||||||||| |    
T  40440679 cggcagttaactgccgctcccactagttagcagaatcagtgcaacatgcactggttttttccagaaaatttgtcctgttttacctataatttcaaacggc 40440778  T
Q  236 aattc 240  Q
    |||||    
T  40440779 aattc 40440783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 1299149 - 1299072
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcc-ccagcggcagttaact 147  Q
    ||||||||| |||| |||||||||||||||||||||||||||| |||| || |||||| || ||||||| ||||||||    
T  1299149 agaaaattgcttttttgacataggaaacttcctattgacacaaataatgtatataattgcctccagcggtagttaact 1299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 6272563 - 6272618
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcact 187  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||    
T  6272563 ccagcggcagttaactgtcattcacaccagttaacagaaccaatgcactctccact 6272618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 42737009 - 42736958
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaattta 121  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  42737009 aagaaaattgtttttttgacatagaatacttcctattgacacaagtaattta 42736958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 42734398 - 42734448
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaattta 121  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  42734398 agaaaattgtttttctaacatagaatacttcctattgacacaagtaattta 42734448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 1295958 - 1295994
Alignment:
Q  86 tgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||||||||||||||||||||||||||||||||    
T  1295958 tgacataggaaacttcctattgacacaagtaatttac 1295994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 42014540 - 42014480
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    |||| |||||||||||| | |||||||||||||||||||| |||||| | |||||||||||    
T  42014540 ccagtggcagttaactgtcgttcacaccagttaacagaactagtgcactatgcactggttt 42014480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 27030687 - 27030640
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27030687 aagaaaattgtttttctgacataggaaacttcacattgacataagtaa 27030640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 45075208 - 45075283
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaac 146  Q
    |||||||||||||||||||  | |||||||||||||||||||||||  ||| | |||  |||||||||||||||||    
T  45075208 gaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaaatactaaaatgcccccagcggcagttaac 45075283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 2206351 - 2206305
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  2206351 agaaaattgcttttctgacatagaatacttcctattgacacaagtaa 2206305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 45075324 - 45075407
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgtttt 216  Q
    |||||| | |||||||||| ||||||||| | ||||  ||||||||| |||||||||||||   ||||||||| |||||||||||    
T  45075324 ccagcgactgttaactgccgttcacaccaataaacaagaccagtgcaatctgcactggttt-ttccaggaaatctgtcttgtttt 45075407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 42027082 - 42027036
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||||||||| ||||||||| ||| || ||||||||||||    
T  42027082 agaaaattgtttttctgtcataggaaatttcataatgacacaagtaa 42027036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 47868542 - 47868492
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||||| ||| |||||||||||| |||||||||||    
T  47868542 gaaaattgcttttttgacatagaaaagttcctattgacataagtaatttac 47868492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 20708207 - 20708252
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||||||||||||||||||||  | ||||||||||||    
T  20708207 gaaaattgcttttctgacataggaaacttcacaatgacacaagtaa 20708252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 20876251 - 20876296
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||||||||||||||||||||  | ||||||||||||    
T  20876251 gaaaattgcttttctgacataggaaacttcacaatgacacaagtaa 20876296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 33942692 - 33942583
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  33942692 cccagtggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactggtttagcctaggaaatttgtcatgttttacctataatttcaa 33942593  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  33942592 acggcaattc 33942583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 32428730 - 32428624
Alignment:
Q  133 cagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaac 232  Q
    |||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32428730 cagcggtagttatctgtcgttcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggagatttgtcatgttttacctataatttcaaac 32428631  T
Q  233 gtcaatt 239  Q
    | |||||    
T  32428630 ggcaatt 32428624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 2282215 - 2282323
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    |||||||||||||||||||  |||||||||||| ||||| |||||||| ||||||||||||   |||||||||||||| ||||||| |||||||||||||    
T  2282215 ccagcggcagttaactgccgctcacaccagttagcagaatcagtgcagcctgcactggttttttccaggaaatttgtcctgttttaactataatttcaaa 2282314  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  2282315 cggcaattc 2282323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 12515264 - 12515156
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    |||||||||||||||||||  |||||||||||| ||||| |||||||| ||||||||||||   |||||||||||||| |||||||||||||||| ||||    
T  12515264 ccagcggcagttaactgcctctcacaccagttagcagaatcagtgcagcctgcactggttttttccaggaaatttgtcctgttttacctataattccaaa 12515165  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  12515164 cggcaattc 12515156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 51545383 - 51545491
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    ||||||||| |||| || |  |||||||||||||||||| ||||||| ||| |||||||||   |||||||||||||||||||||||||||||||||| |    
T  51545383 ccagcggcaattaattgtcgctcacaccagttaacagaatcagtgcaatcttcactggttttttccaggaaatttgtcttgttttacctataatttcaga 51545482  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  51545483 cggcaattc 51545491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 33942809 - 33942733
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  33942809 agaaaattgcttttgtgacataggaaacttcctattgacacaagtaatttacataattgcccccaacggcagttaac 33942733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 40465696 - 40465784
Alignment:
Q  145 actgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||   ||| ||||||| || ||| |||||||||||||||||||    
T  40465696 actgccgttcacaccagttaatagaaccagtgtagtctgcactggttttttccaagaaatttatcatgtgttacctataatttcaaacg 40465784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 32428848 - 32428773
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||| ||||||||    
T  32428848 gaaaattgcttttctgacatagaaaacttcctattgacataagtaatttacataattgcccccagcgacagttaac 32428773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 42329145 - 42329098
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  42329145 aagaaaattgcttttctgacataggaaacttcctattgacacaagtaa 42329098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 40465593 - 40465638
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  40465593 gaaaattgtttttctgacatagaaaacttcctattgacacaagtaa 40465638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 51545240 - 51545316
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    ||||||||| ||||||||||||| |||||||  | |||||||||||||||||||||||  ||||||| |||||||||    
T  51545240 agaaaattgcttttctgacatagaaaacttcacaatgacacaagtaatttacataattgcccccagcagcagttaac 51545316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 4117815 - 4117902
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaactgccattca 155  Q
    ||||||||||| |||||||| |||| |||||||  | |||||||||||||||||||||||  |||| |||||||||||| ||| ||||    
T  4117815 taagaaaattgcttttctgatatagaaaacttcacaatgacacaagtaatttacataattgcccccggcggcagttaaccgccgttca 4117902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 14633472 - 14633427
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  14633472 gaaaattgtttttctgacatagaatacttcctattgacacaagtaa 14633427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 50459691 - 50459615
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaattta-cataatttccccagcggcagttaac 146  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||| || |   ||||||||||||||||||    
T  50459691 aagaaaattgtttt-ctgacatagaatacttcctattgacacaagtaatttaccaaagagtccccagcggcagttaac 50459615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 177537 - 177581
Alignment:
Q  136 cggcagttaactgccattcacaccagttaacagaaccagtgcagt 180  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  177537 cggcagttaactgtcattcacaccagttaacagaatcagtgcagt 177581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 47642837 - 47642761
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaactg 148  Q
    |||||||| ||||||||||||| | |||||||||| |||||||||| | ||  |||| ||||||||| |||||||||    
T  47642837 gaaaattgcttttctgacatagaatacttcctattaacacaagtaaatgaccaaattaccccagcggtagttaactg 47642761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 46412468 - 46412515
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||| ||||||||||||| | |||||||||||||||||||||    
T  46412468 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaa 46412515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 30191664 - 30191710
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  30191664 agaaaattgcttttctgacatagaatacttcctattgacacaagtaa 30191710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 49272720 - 49272802
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaactgccatt 153  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||| | ||  |  | |||||||||||||||||||||||||    
T  49272720 gaaaattgtttttctagcatagaatacttcctattgacacaagtaaatgacgcttttatccccagcggcagttaactgccatt 49272802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 18912221 - 18912168
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcact 187  Q
    ||||||||||||||||  |||||||||||||||||||||| |||| | ||||||    
T  18912221 agcggcagttaactgctgttcacaccagttaacagaaccaatgcactttgcact 18912168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 48098205 - 48098160
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  48098205 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 48098160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 10054353 - 10054306
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||| ||||||||||||| | |||||||||| ||||||||||    
T  10054353 aagaaaattgcttttctgacatagaatacttcctattaacacaagtaa 10054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 21196417 - 21196496
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaactgcc 150  Q
    |||||||| ||||||||||||| | | ||||||||||||||||||| | ||| |||| |||  ||||| |||||||||||    
T  21196417 gaaaattgcttttctgacatagaatatttcctattgacacaagtaaatgacaaaattatccatagcggtagttaactgcc 21196496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 4117941 - 4118023
Alignment:
Q  159 cagttaacagaaccagtgcagtctgcactggtttagc-ccaggaaatttgtcttgttttacctataatttcaaacgtcaattc 240  Q
    |||||||||||| || ||||||||||| ||||||    |||| ||| ||||| ||||||| ||||||||||||||| ||||||    
T  4117941 cagttaacagaatcaatgcagtctgcattggtttttttccagaaaagttgtcgtgttttatctataatttcaaacggcaattc 4118023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 48165193 - 48165155
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaa 170  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  48165193 ccagcggcagttaactgccgttcataccagttaacagaa 48165155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 10283731 - 10283788
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt 128  Q
    ||||||||| | ||||||||||| |||||||  | ||||| |||||||||||||||||    
T  10283731 agaaaattgatcttctgacatagaaaacttcacaatgacataagtaatttacataatt 10283788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 11379825 - 11379780
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||| ||||||||||||||||    
T  11379825 gaaaattgcttttctgacatagaatactttctattgacacaagtaa 11379780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 18942600 - 18942645
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||  | ||| |||||||||||||||||||    
T  18942600 gaaaattgtttttctgacaatgaaaatttcctattgacacaagtaa 18942645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 30715873 - 30715950
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacat-aatttccccagcggcagttaact 147  Q
    ||||||||| |||| ||||| | |||| |||||||||||||||||||  ||||| |||  ||||||||| ||||||||    
T  30715873 agaaaattgcttttttgacaaatgaaagttcctattgacacaagtaaaatacataaatacccccagcggtagttaact 30715950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 47760978 - 47760933
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||| ||||||||    
T  47760978 gaaaattgcttttctgacatagaatacttcctattgatacaagtaa 47760933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 21196648 - 21196604
Alignment:
Q  73 aaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||| |||| |||||||| | |||||||||||||||||||||    
T  21196648 aaaattgcttttttgacatagaatacttcctattgacacaagtaa 21196604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 37222886 - 37222838
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatt 119  Q
    |||||||||||||| |||||| | | |||||||||| ||||||||||||    
T  37222886 agaaaattgtttttttgacatggaatacttcctatttacacaagtaatt 37222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 45035072 - 45035012
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    |||||| |||||||||||| ||||| | |||||||| |||||||||| | ||||| |||||    
T  45035072 ccagcgccagttaactgccgttcacgctagttaacaaaaccagtgcactatgcacgggttt 45035012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 54922628 - 54922552
Alignment:
Q  74 aaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaactgcc 150  Q
    |||||| |||| |||||| | | ||||||||||||||||| ||| | ||  |||| ||||||||| |||||||||||    
T  54922628 aaattgcttttttgacattgtatacttcctattgacacaaataaatgactaaattaccccagcggtagttaactgcc 54922552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 28865855 - 28865744
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagc-ccaggaaatttgtcttgttttacctataatttca 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  28865855 cccagcggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactggtttttttccaggaaatttgtcttgttttacctataatttca 28865756  T
Q  230 aacgtcaattct 241  Q
    ||||||||||||    
T  28865755 aacgtcaattct 28865744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 7407422 - 7407316
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||| | || |||||| | |||||||||||||||||||||    
T  7407422 agcggcagttaactgttgttcacaccagttaacagaaccagtgcagtctgcactagtttagcccggaaagtttgtcatattttacctataatttcaaacg 7407323  T
Q  234 tcaattc 240  Q
     ||||||    
T  7407322 gcaattc 7407316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 45475491 - 45475383
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaa 230  Q
    |||||||||| |||||||||  |||||||||||||||||| |||||||| ||||||||||||   |||||||||||||| ||||||||||||||||||||    
T  45475491 cccagcggcaattaactgccgctcacaccagttaacagaatcagtgcaggctgcactggttt-ttccaggaaatttgtcatgttttacctataatttcaa 45475393  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  45475392 acggcaattc 45475383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 36354662 - 36354769
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||   |  ||||||||||| | |||||||||||||||||||    
T  36354662 ccagcggcagttaactgtcgttcacaccagttaacagaaccagtgcagcctgcactggttttttcttggaaatttgtcatattttacctataatttcaaa 36354761  T
Q  232 cgtcaatt 239  Q
    || |||||    
T  36354762 cggcaatt 36354769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 46191836 - 46191945
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagc-ccaggaaatttgtcttgttttacctataatttcaa 230  Q
    |||| |||||||||| ||| ||||| ||||||||||||||||| |||||| ||||||||||    |||||||||||||||||||||||||||||||||||    
T  46191836 ccagtggcagttaaccgccgttcacgccagttaacagaaccagcgcagtcagcactggtttttttccaggaaatttgtcttgttttacctataatttcaa 46191935  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  46191936 acggcaattc 46191945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 7407542 - 7407466
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    ||||||||  |||| | |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  7407542 agaaaattccttttttcacataggaaacttcctattgacacaagtaatttatataattgcccccagcggcagttaac 7407466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 48138670 - 48138710
Alignment:
Q  88 acataggaaacttcctattgacacaagtaatttacataatt 128  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48138670 acataggaaacttcctattgacacaagtaatttacataatt 48138710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 46191749 - 46191794
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  46191749 gaaaattgcttttctgacataagaaacttcctattgacacaagtaa 46191794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 18883847 - 18883967
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaactgccattcacaccagttaacagaac 171  Q
    |||||||| ||||||||||||  ||| |||  | ||||||| | || |||| ||||  ||||| || |||||||| |||||||||||| || ||||||||    
T  18883847 gaaaattgcttttctgacatacaaaagttcacaatgacacatgaaaattacctaatagccccatcgacagttaacagccattcacaccggtaaacagaac 18883946  T
Q  172 cagtgcagtctgcactggttt 192  Q
      |||||||||||| ||||||    
T  18883947 ttgtgcagtctgcaatggttt 18883967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 22093401 - 22093461
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    ||||||||||||||||||| ||||||||||| || |  ||||||||||||| |||||||||    
T  22093401 ccagcggcagttaactgccgttcacaccagtaaataagaccagtgcagtctacactggttt 22093461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 27285988 - 27285933
Alignment:
Q  130 ccccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgca 185  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||  ||||||||||||    
T  27285988 ccccagcggcatttaactgccgttcacaccagtaaacagaacatgtgcagtctgca 27285933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 7402843 - 7402892
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  7402843 gaaaattgcttttttgacataggaaacttcctattgaca-aagtaatttac 7402892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 48138818 - 48138860
Alignment:
Q  198 aggaaatttgtcttgttttacctataatttcaaacgtcaattc 240  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  48138818 aggaaatttgtcatgttttacctataatttcaaacggcaattc 48138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 12789633 - 12789690
Alignment:
Q  60 acaatactgtaagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||| | ||||||||||| |||||||||||||||||||||  | ||||||||||||    
T  12789633 acaataatttaagaaaattgcttttctgacataggaaacttcacaatgacacaagtaa 12789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 15356440 - 15356395
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  15356440 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 15356395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 36354544 - 36354581
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctatt 106  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36354544 taagaaaattgtttttttgacataggaaacttcctatt 36354581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 37780082 - 37780037
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | | |||||||||||||||||||    
T  37780082 gaaaattgtttttctgacatagaatatttcctattgacacaagtaa 37780037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 48139465 - 48139412
Alignment:
Q  94 gaaacttcctattgacacaagtaatttacataatttc-cccagcggcagttaac 146  Q
    |||||||| |||||||||||||||||||||||||| | || |||||||||||||    
T  48139465 gaaacttcatattgacacaagtaatttacataattgctcctagcggcagttaac 48139412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 18239449 - 18239496
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||| ||||| |||| |||||||| |||||||||||||||||||||||    
T  18239449 aagacaattgcttttttgacatagaaaacttcctattgacacaagtaa 18239496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 27105744 - 27105803
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtt 191  Q
    ||||||||||||||||||| |||| |||||| |||   |||||||| |||||||||||||    
T  27105744 ccagcggcagttaactgccgttcataccagtaaactagaccagtgctgtctgcactggtt 27105803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 34814477 - 34814524
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||| ||||||||| |||||||| | |||||||||||||||||||||    
T  34814477 aagaagattgtttttttgacatagaatacttcctattgacacaagtaa 34814524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 48139371 - 48139332
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaa 170  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  48139371 cccagcggcagttaactgccgttcacaccagttaatagaa 48139332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 14441171 - 14441122
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||||| | ||||||||||||||||||||||||||    
T  14441171 gaaaattgctttt-tgacatagaatacttcctattgacacaagtaatttac 14441122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 27105627 - 27105672
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||  | ||||||| |||||||||||||||    
T  27105627 gaaaattgtttttctgacaatgaaaacttcatattgacacaagtaa 27105672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 28861922 - 28861975
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    ||||||||||| |||| ||||||   | ||||||||||||||||||||||||||    
T  28861922 taagaaaattgcttttttgacatgaaatacttcctattgacacaagtaatttac 28861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 34815734 - 34815689
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaag 114  Q
    ||||||||||| ||||||||||||| | | ||||||||||||||||    
T  34815734 taagaaaattgcttttctgacatagaatatttcctattgacacaag 34815689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 35585103 - 35585148
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | |||||||||||| | ||||||    
T  35585103 gaaaattgtttttctgacatagaatacttcctattgatataagtaa 35585148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 45475607 - 45475550
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt 128  Q
    ||||||||| ||||||||||||| ||| |||  | ||||| |||||||||||||||||    
T  45475607 agaaaattgcttttctgacatagaaaatttcacaatgacataagtaatttacataatt 45475550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 48138771 - 48138812
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaacca 173  Q
    ||||||||||||||||| | |||||||||||||| |||||||    
T  48138771 ccagcggcagttaactgtcgttcacaccagttaaaagaacca 48138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 28865973 - 28865937
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctatt 106  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  28865973 aagaaaattgtttttctgacatagaaaacttcatatt 28865937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 51164586 - 51164638
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||||| ||||  ||||||  | ||||||||||||||||||||||||||    
T  51164586 aagaaaattgctttttagacataaaatacttcctattgacacaagtaatttac 51164638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 31860666 - 31860564
Alignment:
Q  137 ggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtca 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||| ||    
T  31860666 ggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcattggttttttccaggaaatttgtcttgttttacctataatttcaaacggca 31860567  T
Q  237 att 239  Q
    |||    
T  31860566 att 31860564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 29230683 - 29230791
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    |||||||||||||||||||  || ||| ||||| ||||| | |||||| ||||||||||||   ||||||||||||||||||||||||||||||||| ||    
T  29230683 ccagcggcagttaactgccgctctcactagttagcagaatcggtgcagcctgcactggttttttccaggaaatttgtcttgttttacctataatttcgaa 29230782  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  29230783 cgacaattc 29230791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 22868480 - 22868407
Alignment:
Q  74 aaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcccc-agcggcagttaac 146  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22868480 aaattgcttttttgacatagaaaacttcctattgacacaagtaatttacataatttcccctagcggcagttaac 22868407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 32264154 - 32264097
Alignment:
Q  135 gcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  32264154 gcggcagttaactgccgttcacaccagtaaacagaaccagtgcagtctgcaatggttt 32264097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 22865990 - 22865934
Alignment:
Q  177 cagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||    
T  22865990 cagtctgcactggtttaacccaagaaatttgtcctgttttacctataatttcaaacg 22865934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 5620719 - 5620659
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    |||||||||||| ||||   ||||||||||||| |||||||||||||||||||||||||||    
T  5620719 ccagcggcagttgactgttgttcacaccagttagcagaaccagtgcagtctgcactggttt 5620659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 22868366 - 22868314
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctg 183  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  22868366 cccagcggcagttaactgtcgttcacactagttaacagaaccagtgcagtctg 22868314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 31860791 - 31860713
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    ||||||||||| ||||||||||||| |||||||  | |||||||||||| | ||||||||  |||||||||||||||||    
T  31860791 taagaaaattgcttttctgacatagaaaacttcacaatgacacaagtaaatgacataattgcccccagcggcagttaac 31860713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 5620836 - 5620760
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacat-aatttccccagcggcagttaac 146  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||  ||| | |||  |||||||||||||||||    
T  5620836 agaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaactacgtaaatgcccccagcggcagttaac 5620760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 29268292 - 29268248
Alignment:
Q  196 ccaggaaatttgtcttgttttacctataatttcaaacgtcaattc 240  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  29268292 ccagaaaatttgtcatgttttacctataatttcaaacgacaattc 29268248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 12398820 - 12398742
Alignment:
Q  73 aaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaactgcc 150  Q
    ||||||| ||||||| ||||| | ||||||||||||||||||||| | ||  |  | ||||||||||||||||||||||    
T  12398820 aaaattgcttttctgtcatagaatacttcctattgacacaagtaaatgacgcttttatccccagcggcagttaactgcc 12398742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 5613793 - 5613877
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacat-aatttccccagcggcagttaactgccatt 153  Q
    |||||||||| |||| ||||| |||||| ||||||||||| |||||||  ||| | |||  ||||||||| |||||||| |||||    
T  5613793 aagaaaattgcttttttgacaaaggaaagttcctattgacccaagtaaaatacttaaatacccccagcggtagttaactaccatt 5613877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 13331852 - 13331741
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactgg----tttagcccaggaaatttgtcttgttttacctataattt 227  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||   ||||||||||||||||||||||||||||||||    
T  13331852 ccagcggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactgggtttttttttccaggaaatttgtcttgttttacctataattt 13331753  T
Q  228 caaacgtcaatt 239  Q
    |||||| |||||    
T  13331752 caaacggcaatt 13331741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 34522766 - 34522715
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  34522766 agaaaattgattttctgacatagaatacttcctattgacacaagtaatttac 34522715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 24108517 - 24108472
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  24108517 gaaaattgtttttctgacatagaatacttcctattgacacaagtaa 24108472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 31173497 - 31173606
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttg-ttttacctataatttcaa 230  Q
    ||||| ||||||||||||| ||||||||||| || | ||||||||||||||| ||||   |   ||||||| |||  |||| ||||||||||||||||||    
T  31173497 ccagcagcagttaactgccgttcacaccagtaaaaataaccagtgcagtctggactgtgattttccaggaactttagcttgtttttacctataatttcaa 31173596  T
Q  231 acgtcaattc 240  Q
    ||| ||||||    
T  31173597 acgacaattc 31173606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 2121370 - 2121319
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||||||||| |||||| | | ||||||||||||||||||||||||||    
T  2121370 agaaaattgtttttttgacatggaatacttcctattgacacaagtaatttac 2121319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 4425018 - 4425064
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  4425018 agaaaattgattttctgacatagaatacttcctattgacacaagtaa 4425064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 26394140 - 26394064
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtc 209  Q
    |||||||||||||||||   ||||||||||| ||||  |||||||||| ||||||||||||   ||||||||||||||    
T  26394140 ccagcggcagttaactgatgttcacaccagtaaacaagaccagtgcagactgcactggttt-ttccaggaaatttgtc 26394064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 31297640 - 31297685
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  31297640 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 31297685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 28654664 - 28654605
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtt 191  Q
    ||||||||||||||||||| |||| |||||| |||   |||||||| |||||||||||||    
T  28654664 ccagcggcagttaactgccgttcataccagtaaactagaccagtgctgtctgcactggtt 28654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 31298897 - 31298818
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttc-cccagcggcagttaactgcc 150  Q
    |||||||| |||| ||| |||| ||||||||||||||||||||||| | ||  |||| | |||||||| |||||||||||    
T  31298897 gaaaattgcttttttgatatagaaaacttcctattgacacaagtaaatgaccaaattactcccagcggtagttaactgcc 31298818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 10361230 - 10361184
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||||||||||||||  | |||||||||||||| ||||||    
T  10361230 agaaaattgtttttctgacataaaatacttcctattgacataagtaa 10361184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 17112305 - 17112379
Alignment:
Q  73 aaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaac 146  Q
    ||||||| |||| |||||||  | |||||||||||||||||||||||||| | ||   |||||||||||||||||    
T  17112305 aaaattgcttttttgacataaaatacttcctattgacacaagtaatttaccaaaaagcccccagcggcagttaac 17112379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 44037946 - 44037908
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgaca 110  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  44037946 gaaaattgtttttctgacatagaatacttcctattgaca 44037908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 6975962 - 6976007
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||||||| |||| | |||||||||||||||||||||    
T  6975962 gaaaattgcttttctgatatagaatacttcctattgacacaagtaa 6976007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 34519902 - 34519951
Alignment:
Q  73 aaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    ||||||| |||| |||||||  | ||||||||||||||||||||||||||    
T  34519902 aaaattgcttttttgacataaaatacttcctattgacacaagtaatttac 34519951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 37180980 - 37180947
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttccta 104  Q
    |||||||||||||||||||||| |||||||||||    
T  37180980 agaaaattgtttttctgacatacgaaacttccta 37180947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 44074385 - 44074344
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaa 113  Q
    |||||||| |||||| |||||||| |||||||||||||||||    
T  44074385 gaaaattgcttttctaacataggatacttcctattgacacaa 44074344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 3259875 - 3259951
Alignment:
Q  75 aattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaactgcc 150  Q
    ||||| ||||||||||||| | |||| |||||||||||||||| | ||  ||||  ||||||||| |||||||||||    
T  3259875 aattgcttttctgacatagaatactttctattgacacaagtaaatgaccaaattacccccagcggtagttaactgcc 3259951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 26702843 - 26702766
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtc 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26702843 ccagcggcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcactggtttagcccaagaaatttgtc 26702766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 45120688 - 45120581
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaa 231  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||    ||||||||||||| |||||||||||||||||||||    
T  45120688 ccagcggcagttaactgccgttcacaccagtaaacagaaccagtgcaatctgcactggttt-tttcaggaaatttgtcatgttttacctataatttcaaa 45120590  T
Q  232 cgtcaattc 240  Q
    || ||||||    
T  45120589 cggcaattc 45120581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 43610703 - 43610783
Alignment:
Q  159 cagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacgtcaatt 239  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||    
T  43610703 cagttaacagaaccagtgcagtctgcactggtttagcctaggaaatttgtcatgtgttacctataatttcaaacggcaatt 43610783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 17443300 - 17443197
Alignment:
Q  131 cccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcact-ggtttagcccaggaaatttgtcttgttttacctataatttca 229  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||   || ||||||||||| |||||||||||||||||||    
T  17443300 cccaacggcagttaactgccgttcacaccagttaacagaatcagtgcagtctgcactagtttttttcctggaaatttgtcctgttttacctataatttca 17443201  T
Q  230 aacg 233  Q
    ||||    
T  17443200 aacg 17443197  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 16583613 - 16583508
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||| |||   |||| ||||||||| ||||||| || ||||||||||||    
T  16583613 agcggcagttaactgtgattcacaccagtgaacagaaccagtgcagtctgcactgattttttccagaaaatttgtcatgttttatctttaatttcaaacg 16583514  T
Q  234 tcaatt 239  Q
     |||||    
T  16583513 gcaatt 16583508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 44322977 - 44322872
Alignment:
Q  136 cggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactgg-tttagcccaggaaatttgtcttgttttacctataatttcaaacgt 234  Q
    |||||||||||| ||  || ||||||||||||||| |||||||||||||||||| |||    ||| |||||||||||||||||||||||||||||||||     
T  44322977 cggcagttaactaccgctcccaccagttaacagaatcagtgcagtctgcactggttttttttcagaaaatttgtcttgttttacctataatttcaaacgg 44322878  T
Q  235 caattc 240  Q
    ||||||    
T  44322877 caattc 44322872  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 43610578 - 43610654
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| | | ||||||||||||||    
T  43610578 agaaaattgcttttctgacataggaaacttcctattagcacaagtaatttacataattgttctcagcggcagttaac 43610654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 26702961 - 26702900
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcccc 133  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26702961 gaaaatttattttttgacataggaaacttcctattgacacaagtaatttacataattgcccc 26702900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 26701829 - 26701879
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  26701829 gaaaattgcttttttgacataggaaacttcctattgacacaagtaatttac 26701879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 41270266 - 41270206
Alignment:
Q  132 ccagcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    |||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||    
T  41270266 ccagcggcagttaattgccgttcacactagttaacaaaaccagtgcactctgcactggttt 41270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 17443418 - 17443355
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcccc 133  Q
    |||||||||||||||||||||||| |||||||  | |||||||||||| || ||||||| ||||    
T  17443418 aagaaaattgtttttctgacatagaaaacttcacaatgacacaagtaaattgcataattacccc 17443355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 41362980 - 41363027
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  41362980 aagaaaattgtttttctgacataaaatacttcctattgacacaagtaa 41363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 45120804 - 45120729
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaac 146  Q
    |||||||| ||||||||||||| ||| |||  | |||||||||||| |||| ||||| ||||||||||||||||||    
T  45120804 gaaaattgcttttctgacatagaaaagttcacaatgacacaagtaaattacttaattgtccccagcggcagttaac 45120729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 2809293 - 2809215
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttccccagcggcagttaactgcc 150  Q
    ||||||||||||| |||||| | | ||||| ||||||||||||||| | ||  |||| ||||||||| |||||||||||    
T  2809293 gaaaattgtttttttgacattgaatacttcttattgacacaagtaaatgaccaaattaccccagcggtagttaactgcc 2809215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 8036250 - 8036295
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||    
T  8036250 gaaaattgcttttctgacatagaatacttcctattgacacaagtaa 8036295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 23231383 - 23231306
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatttcc-ccagcggcagttaac 146  Q
    |||||||||||||||||||||||| ||| |||  | |||||||||||| |||| ||||  || |||||||||||||||    
T  23231383 aagaaaattgtttttctgacatagaaaagttcacaatgacacaagtaaattacctaatagcctccagcggcagttaac 23231306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 40678338 - 40678293
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||    
T  40678338 gaaaattgtttttttgacatagaatacttcctattgacacaagtaa 40678293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 16583188 - 16583240
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    |||||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  16583188 aagaaaattgcttttttgacatggaatacttcctattgacacaagtaatttac 16583240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 40494160 - 40494114
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||||    
T  40494160 agaaaattgattttctgacaatgaaaacttcctattgacacaagtaa 40494114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 27641530 - 27641575
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| ||||||||||||| | |||| ||||||||||||||||    
T  27641530 gaaaattgcttttctgacatagaatactttctattgacacaagtaa 27641575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 14737729 - 14737677
Alignment:
Q  72 gaaaattgtttttct-gacataggaaacttcctattgacacaagtaatttaca 123  Q
    ||||||||||||| | ||||||  | |||||||||||||||||||||||||||    
T  14737729 gaaaattgttttttttgacataaaatacttcctattgacacaagtaatttaca 14737677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 17732057 - 17732017
Alignment:
Q  152 ttcacaccagttaacagaaccagtgcagtctgcactggttt 192  Q
    ||||||||||| ||||||||| |||||||||||| ||||||    
T  17732057 ttcacaccagtaaacagaaccggtgcagtctgcaatggttt 17732017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 20495611 - 20495567
Alignment:
Q  73 aaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    ||||||| |||| |||||||| ||||||| |||||||||||||||    
T  20495611 aaaattgcttttttgacatagaaaacttcgtattgacacaagtaa 20495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 38032145 - 38032221
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaac 146  Q
    |||||||||  ||| |||||||| | | |||||||||||||||||||||||| | ||   |||||||||||||||||    
T  38032145 agaaaattgcctttttgacatagaatatttcctattgacacaagtaatttaccaaaaagcccccagcggcagttaac 38032221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 42095505 - 42095553
Alignment:
Q  139 cagttaactgccattcacaccagttaacagaaccagtgcagtctgcact 187  Q
    |||||||||||| ||||||| ||| ||||  ||||||||||||||||||    
T  42095505 cagttaactgccgttcacactagtaaacaagaccagtgcagtctgcact 42095553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 44323093 - 44323013
Alignment:
Q  76 attgtttttctgacataggaaacttcctattgacacaagtaatttacataatttc-cccagcggcagttaactgccattca 155  Q
    |||| |||||| ||||||||||||||  |  ||||||| |||||||||||||| | |||||| ||||||||| ||| ||||    
T  44323093 attgcttttctaacataggaaacttcacaaagacacaaataatttacataattgctcccagcagcagttaaccgccgttca 44323013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 19088 - 19187
Alignment:
Q  134 agcggcagttaactgccattcacaccagttaacagaaccagtgcagtctgcactggtttagcccaggaaatttgtcttgttttacctataatttcaaacg 233  Q
    |||||||||||||||||  |||||||||||||||||| |||||||  ||||||||||||   |||||||||||||| ||||||||| |||||||||||||    
T  19088 agcggcagttaactgccgctcacaccagttaacagaatcagtgcatgctgcactggttttttccaggaaatttgtcctgttttacccataatttcaaacg 19187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 18967 - 19048
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaattta-cataatttccccagcggcagttaactgcc 150  Q
    ||||| |||| |||| || ||||| | ||||||||||||||||||||||||| || ||   || ||||||||||||||||||    
T  18967 aagaagattgcttttttggcatagaatacttcctattgacacaagtaatttaccaaaaagccctcagcggcagttaactgcc 19048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 2602 - 2722
Alignment:
Q  70 aagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac-ataatttccccagcggcagttaactgccattcacaccagttaacag 168  Q
    |||||||||| ||||||||||  |  ||||||||||||||||||||||  ||| | ||| ||| |||||||||||||||||| ||||||||||| ||||     
T  2602 aagaaaattgcttttctgacaatgacaacttcctattgacacaagtaaaatactaaaatgtcctcagcggcagttaactgccgttcacaccagtaaacaa 2701  T
Q  169 aaccagtgcagtctgcactgg 189  Q
     |||| |||||||||||||||    
T  2702 gaccaatgcagtctgcactgg 2722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 802 - 751
Alignment:
Q  71 agaaaattgtttttctgacataggaaacttcctattgacacaagtaatttac 122  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  802 agaaaattgattttctgacatagaatacttcctattgacacaagtaatttac 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 6976 - 6943
Alignment:
Q  197 caggaaatttgtcttgttttacctataatttcaa 230  Q
    ||||||||||||||||||||||||||||||||||    
T  6976 caggaaatttgtcttgttttacctataatttcaa 6943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 127201 - 127283
Alignment:
Q  69 taagaaaattgtttttctgacataggaaacttcctattgacacaagtaatttacataatt-tccccagcggcagttaactgcc 150  Q
    ||||||||||| |||||||||| || | ||||||||| ||||||||||| | ||  ||||  ||||||||| |||||||||||    
T  127201 taagaaaattgcttttctgacaaagaatacttcctatcgacacaagtaaatgaccaaattacccccagcggtagttaactgcc 127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 130612 - 130567
Alignment:
Q  72 gaaaattgtttttctgacataggaaacttcctattgacacaagtaa 117  Q
    |||||||| |||| |||||||| | |||||||||||||||||||||    
T  130612 gaaaattgcttttttgacatagaatacttcctattgacacaagtaa 130567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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