View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_5 (Length: 519)
Name: NF10151_low_5
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 52797337 - 52797837
Alignment:
| Q |
1 |
agtttgtgacattgatagtaatattattgtgttgtaggaaatgttcactgcagggacagacacgacaacaagcacactagaatgggcgatggcggagctt |
100 |
Q |
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| T |
52797337 |
agtttgtgacattgatagtaatattattgtgttgtaggaaatgttcactgcagggacagacacgacaacaagcacactagaatgggcgatggcggagctt |
52797436 |
T |
|
| Q |
101 |
ctgcacaacccaagaaccctattgaaagtgcaaatggaactaaggagcaaaataagctctgataggaaaatggaagaaaaggacatagagagtcttccat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797437 |
ctgcacaacccaagaaccctatcaaaagtgcaaatggaactaaggagcaaaataagctctgataggaaaatggaagaaaaggacatagagagtcttccat |
52797536 |
T |
|
| Q |
201 |
acctcaaagcagttatcaaggagacgttgagactccacccacctcttccttttttggttcctcacatggccatggactcttgcatgattggagactactt |
300 |
Q |
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| T |
52797537 |
acctcaaagcagttatcaaggagacgttgagacttcacccacctcttccttttttggttcctcacatggccatggactcttgcatgattggagactactt |
52797636 |
T |
|
| Q |
301 |
cattccaaaagagacacaaattttagtgaatgtttgggcaattgggagggatccaaaagtgtgggatgctcccttattgttctggccagaaaggtttatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797637 |
cattccaaaagagacacaaattttagtgaatgtttgggcaattgggagggatccaaaagtgtgggatgctcccttattgttctggccagaaaggtttatg |
52797736 |
T |
|
| Q |
401 |
cagccaaacatggtagattacaaaggacaccattttgagtatataccttttggttcgggtcggagaatgtgcccggcattgccgcttgcctcgcgtgtgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52797737 |
cagccaaacatggtagattacaaaggacaccattttgagtatataccttttggttcgggtcgaagaatgtgcccggcattgccgcttgcctcgcgtgtgc |
52797836 |
T |
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| Q |
501 |
t |
501 |
Q |
| |
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| T |
52797837 |
t |
52797837 |
T |
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