View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_50 (Length: 240)
Name: NF10151_low_50
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17353282 - 17353505
Alignment:
| Q |
1 |
ttcaatgatgcatcagacatcgtttcattatcatatcagattcccttcctagctcattaagataatttatgttttgtatgaatgtaattcttttctttca |
100 |
Q |
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| T |
17353282 |
ttcaatgatgcagcaaacatcatttcattatcatatcagattcccttcctagctcattaagataatttatgttctgtctgaatgtaattcttttgtttca |
17353381 |
T |
|
| Q |
101 |
actcttatcatgtcattttgtagttttcgaaaatccattccaccaagtaattcatcaaaatgttagtattattaaatctcatgcnnnnnnnccaaattgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
17353382 |
actcttatcatgtcattttgtagttttcgaaaatctattccaccaagtaattcatcaaaatgttagtattattaaatctcatgcaaaaaaatcatatggt |
17353481 |
T |
|
| Q |
201 |
actcaacacaaggatatgcaaatt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
17353482 |
actcaacacaaggatatgcaaatt |
17353505 |
T |
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