View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_low_53 (Length: 239)

Name: NF10151_low_53

Description: NF10151

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10151_low_53

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 144; E-Value: 8e-76

Query Start/End: Original strand, 61 - 225

Target Start/End: Original strand, 41734937 - 41735101

Alignment:

Q	61	ttcatccacgtctgcccctccctaaattcgtcgcagacaatgatgtcatatatctccctttttatatcactttcaatgnnnnnnnataatggcaaagaaa	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41734937	ttcatccacgtctgcccctccctaaattcgtcgcagacaatgatgtcatatatctccctttttatatcactttcaatgtatttttataatggcaaagaaa	41735036	T

Q	161	ttcatttcattaaaaatttaaaggatcaatggtatgccaacataaaaatgataatatttggcatt	225	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41735037	ttcatttcattaaaaatttaaaggatcaatggtatgccaacataaaaatgataatatttggcatt	41735101	T

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Target: chr8; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 1 - 62

Target Start/End: Original strand, 41734234 - 41734293

Alignment:

Q	1	actaaattcgaccaaaaaattcacctaatgatnnnnnnnncggatagttgcaaacataattt	62	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41734234	actaaattcgaccaaaaaattcacctaatgat--aaaaaacggatagttgcaaacataattt	41734293	T

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