View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10151_low_56 (Length: 229)

Name: NF10151_low_56
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10151_low_56
NF10151_low_56
[»] chr8 (5 HSPs)
chr8 (7-229)||(8751865-8752098)
chr8 (26-138)||(24629904-24630012)
chr8 (159-202)||(8752132-8752175)
chr8 (7-138)||(27783551-27783678)
chr8 (103-132)||(26140347-26140376)
[»] chr6 (6 HSPs)
chr6 (6-138)||(5973008-5973136)
chr6 (6-138)||(8710986-8711114)
chr6 (26-132)||(14095760-14095862)
chr6 (101-132)||(21864879-21864910)
chr6 (29-65)||(20244291-20244327)
chr6 (29-65)||(22138275-22138311)
[»] chr7 (3 HSPs)
chr7 (76-138)||(27317797-27317859)
chr7 (7-132)||(12309588-12309709)
chr7 (7-138)||(7066760-7066887)
[»] chr4 (1 HSPs)
chr4 (13-65)||(31931680-31931732)
[»] chr2 (2 HSPs)
chr2 (35-132)||(28746944-28747037)
chr2 (104-132)||(20988711-20988739)
[»] chr3 (2 HSPs)
chr3 (7-63)||(1638656-1638712)
chr3 (26-118)||(17267286-17267380)
[»] chr5 (3 HSPs)
chr5 (99-138)||(28718254-28718293)
chr5 (7-64)||(10975910-10975967)
chr5 (7-131)||(21293928-21294046)
[»] chr1 (1 HSPs)
chr1 (15-138)||(21760366-21760485)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 8751865 - 8752098
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcatagacattttcaacagtttgattctgccaaaaccagaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  8751865 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgttgagatcgaatagatattttcaacagtttgattatgccaaaaccagaaaa 8751964  T
Q  107 ttatgtttaggtagcatcattattatatagtggtc------------taagaagtnnnnnnnnttgtaacttttccttagataattgtgtatatatgact 194  Q
    |||||||||||||||||||||||||||||||||||            ||||||||        |||||||||||||||||||||||||||||||||||||    
T  8751965 ttatgtttaggtagcatcattattatatagtggtctaagacattgtttaagaagt-aaaaaaattgtaacttttccttagataattgtgtatatatgact 8752063  T
Q  195 attaataatgattgagttatattttaaagacaaaa 229  Q
    ||||||||||||||||||||||||| |||||||||    
T  8752064 attaataatgattgagttatattttgaagacaaaa 8752098  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 24630012 - 24629904
Alignment:
Q  26 ttcccgaggattgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccagaaaattatgtttaggtagcat 123  Q
    |||||||||||||||| ||||| || |||||| ||||||| |  ||| ||| |||| ||||||||||||||| ||       ||||||||||||||||||    
T  24630012 ttcccgaggattgagacggaagctatgttgctgagatcgcctgaagatattctcaagagtttgattctgccacaag------attatgtttaggtagcat 24629919  T
Q  124 cattattatatagtg 138  Q
    ||||||||| |||||    
T  24629918 cattattatgtagtg 24629904  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 8752132 - 8752175
Alignment:
Q  159 tgtaacttttccttagataattgtgtatatatgactattaataa 202  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  8752132 tgtaacttttccttagataattgtgtatttatgactaataataa 8752175  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 27783551 - 27783678
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcata-gacatt-ttcaacagtttgattctgccaaaaccagaa 104  Q
    |||| ||||||||||||| ||||| |||||||||||||||  ||||||||| |||||||  | || ||| || || |||||||||||| || ||          
T  27783551 atatcgtcaggaacgcatgttcccaaggattgagatggaatctacgttgctgagatcgctgaagatattctttaagagtttgattctgtcacaag----- 27783645  T
Q  105 aattatgtttaggtagcatcattattatatagtg 138  Q
     ||||||||||||||||||||||||||| |||||    
T  27783646 -attatgtttaggtagcatcattattatgtagtg 27783678  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 26140347 - 26140376
Alignment:
Q  103 aaaattatgtttaggtagcatcattattat 132  Q
    ||||||||||||||||||||||||||||||    
T  26140347 aaaattatgtttaggtagcatcattattat 26140376  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 5973136 - 5973008
Alignment:
Q  6 aatattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccaga 103  Q
    |||||| |||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| |  ||| ||| |||| |||||||||||      |||| |    
T  5973136 aatattatcaggaacgcatgttcccgaggattgagatggaagctacattgctgagatcgcctgaagatattctcaagagtttgattct------accata 5973043  T
Q  104 aaattatgtttaggtagcatcattattatatagtg 138  Q
    | ||||||||||||||||||||||||||| |||||    
T  5973042 agattatgtttaggtagcatcattattatgtagtg 5973008  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 8710986 - 8711114
Alignment:
Q  6 aatattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgc--atagacattttcaacagtttgattctgccaaaaccaga 103  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||| ||||| |||| ||  | ||| ||| |||| |||||||||||      |||| |    
T  8710986 aatattatcaggagcgcatgttcccgaggattgagatggaagctacattgctgagattgcctaaagatattctcaagagtttgattct------accata 8711079  T
Q  104 aaattatgtttaggtagcatcattattatatagtg 138  Q
    | ||||||||||||||||||||||||||| |||||    
T  8711080 agattatgtttaggtagcatcattattatgtagtg 8711114  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 14095760 - 14095862
Alignment:
Q  26 ttcccgaggattgagatggaagttacgttgctaagatcgc--atagacattttcaacagtttgattctgccaaaaccagaaaattatgtttaggtagcat 123  Q
    |||||||||||||||||||||| | ||||||| |||||||   |||| ||| |||| ||||||||| ||      ||| || ||||||||||||||||||    
T  14095760 ttcccgaggattgagatggaagcttcgttgctgagatcgcctgtagatattctcaagagtttgattatg------ccacaagattatgtttaggtagcat 14095853  T
Q  124 cattattat 132  Q
    |||||||||    
T  14095854 cattattat 14095862  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Complemental strand, 21864910 - 21864879
Alignment:
Q  101 agaaaattatgtttaggtagcatcattattat 132  Q
    ||||||||||||||||||||||||||||||||    
T  21864910 agaaaattatgtttaggtagcatcattattat 21864879  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 20244291 - 20244327
Alignment:
Q  29 ccgaggattgagatggaagttacgttgctaagatcgc 65  Q
    ||||||||||||||||| | |||||||||||||||||    
T  20244291 ccgaggattgagatggatgatacgttgctaagatcgc 20244327  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 22138275 - 22138311
Alignment:
Q  29 ccgaggattgagatggaagttacgttgctaagatcgc 65  Q
    ||||||||||||||||| | |||||||||||||||||    
T  22138275 ccgaggattgagatggatgatacgttgctaagatcgc 22138311  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 27317859 - 27317797
Alignment:
Q  76 tcaacagtttgattctgccaaaaccagaaaattatgtttaggtagcatcattattatatagtg 138  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  27317859 tcaatagtttgattctgccgaaaccagaagattatgtttaggtagcatcattattatgtagtg 27317797  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 12309709 - 12309588
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccagaa 104  Q
    |||| ||||| | ||||| ||||||||||||||||||||||  | |||||| |||||||||  ||| ||| |||| ||||||||||||      ||| ||    
T  12309709 atatcgtcagcaccgcatgttcccgaggattgagatggaagccaggttgctgagatcgcatgaagatattctcaagagtttgattctg------ccacaa 12309616  T
Q  105 aattatgtttaggtagcatcattattat 132  Q
     |||||||||||||||||||||||||||    
T  12309615 gattatgtttaggtagcatcattattat 12309588  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 7066760 - 7066887
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccagaa 104  Q
    |||| ||||| | ||||| |||| ||||||||||||||||| ||||||||| ||||||| |  | | ||| | || || |||||||||      ||| ||    
T  7066760 atatcgtcagcaccgcatgttcctgaggattgagatggaagctacgttgctgagatcgcctgaatatattcttaagagcttgattctg------ccacaa 7066853  T
Q  105 aattatgtttaggtagcatcattattatatagtg 138  Q
     ||||||||||||||||||||||||||| |||||    
T  7066854 gattatgtttaggtagcatcattattatgtagtg 7066887  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 31931680 - 31931732
Alignment:
Q  13 tcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgc 65  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  31931680 tcaggaacacatgttcccgaggattgagatggaagttacgttgctgagatcgc 31931732  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 28747037 - 28746944
Alignment:
Q  35 attgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccagaaaattatgtttaggtagcatcattattat 132  Q
    ||||||||||||| ||||||||| ||||||| |  | | ||| ||||||||||||||||||||      ||||||||||||| |||||||||||||||||    
T  28747037 attgagatggaagctacgttgctgagatcgcctgaaaatattctcaacagtttgattctgcca------gaaaattatgtttcggtagcatcattattat 28746944  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 20988711 - 20988739
Alignment:
Q  104 aaattatgtttaggtagcatcattattat 132  Q
    |||||||||||||||||||||||||||||    
T  20988711 aaattatgtttaggtagcatcattattat 20988739  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 1638712 - 1638656
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatc 63  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||| ||||| |||||    
T  1638712 atattatcaggaacgcatgttcccgaggattgagatggaagatacattgctcagatc 1638656  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 17267380 - 17267286
Alignment:
Q  26 ttcccgaggattgagatggaagttacgttgctaagatcgcata--gacattttcaacagtttgattctgccaaaaccagaaaattatgtttaggt 118  Q
    |||||| |||| || ||| ||||||||||||| |||| || ||  || ||| |||| ||||||||||||||| |||||||| |||||||||||||    
T  17267380 ttcccgtggatcgatatgtaagttacgttgctgagattgcctaaagatattctcaagagtttgattctgccagaaccagaagattatgtttaggt 17267286  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 28718254 - 28718293
Alignment:
Q  99 ccagaaaattatgtttaggtagcatcattattatatagtg 138  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28718254 ccagaaaattatgtttaggtagcatcattattatgtagtg 28718293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 10975910 - 10975967
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcg 64  Q
    |||| ||||| | ||||| |||||||||||||||||||||| || |||||| ||||||    
T  10975910 atatcgtcagcaccgcatgttcccgaggattgagatggaagctatgttgctgagatcg 10975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 21293928 - 21294046
Alignment:
Q  7 atattgtcaggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcatagacattttcaacagtttgattctgccaaaaccagaaaa 106  Q
    ||||| |||||||||||| ||||||   | ||||||||||| ||||||||| ||||||  |  | || |||   |||||||||||||||      |||||    
T  21293928 atattatcaggaacgcatgttcccggtaaatgagatggaagctacgttgctgagatcgtctgaagatattctcaagtttgattctgcca------gaaaa 21294021  T
Q  107 ttatgtttaggtagcatcattatta 131  Q
    |||||||||||||||||||| ||||    
T  21294022 ttatgtttaggtagcatcatgatta 21294046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 21760485 - 21760366
Alignment:
Q  15 aggaacgcatattcccgaggattgagatggaagttacgttgctaagatcgcat--agacattttcaacagtttgattctgccaaaaccagaaaattatgt 112  Q
    |||||| ||| |||||||||||||||||||||   |||||| | ||||||  |  ||| ||| ||||||||||||||||      |||| | ||||||||    
T  21760485 aggaacacatgttcccgaggattgagatggaaaccacgttgatgagatcgtctgaagatattctcaacagtttgattct------accatataattatgt 21760392  T
Q  113 ttaggtagcatcattattatatagtg 138  Q
    |||||||||||||||||||| |||||    
T  21760391 ttaggtagcatcattattatgtagtg 21760366  T

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