View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_57 (Length: 227)
Name: NF10151_low_57
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_57 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41733919 - 41734151
Alignment:
| Q |
1 |
atatgagggatggttttagagactttagaaaggactaaatctaggtaaaaaattaagaacgaaatttaaattttgagctcgtaacaaattgagaatttta |
100 |
Q |
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| T |
41733919 |
atatgagggatggttttagagactttagaaaggactaaatctaggtaaaaaattaagaactaaatttaaattttgagctcgtaacaaattgagaatttta |
41734018 |
T |
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| Q |
101 |
ttggaacaaaaattagatttaacctaataatatttgggccgtacgtagcacatacacaattgccacgttaaatgggtagttcacac------gtttttgt |
194 |
Q |
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| T |
41734019 |
ttggaacaaaaattagatttaacctaataatatttgggccgtacgtagcacatacacaattgccacgttaaatgggtagttcacacgtttttgtttttgt |
41734118 |
T |
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| Q |
195 |
gagcttaacttaattggtaaggatattgcataa |
227 |
Q |
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| T |
41734119 |
gagcttaacttaattggtagggatattgcataa |
41734151 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 28581186 - 28581221
Alignment:
| Q |
191 |
ttgtgagcttaacttaattggtaaggatattgcata |
226 |
Q |
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| T |
28581186 |
ttgtgagcttaacttaattggtagggatattgcata |
28581221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 51772888 - 51772925
Alignment:
| Q |
189 |
ttttgtgagcttaacttaattggtaaggatattgcata |
226 |
Q |
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| T |
51772888 |
ttttgtgagcttaacttagttggtagggatattgcata |
51772925 |
T |
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