View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10151_low_8 (Length: 434)
Name: NF10151_low_8
Description: NF10151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10151_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 6262009 - 6261605
Alignment:
| Q |
19 |
ataactagtctagctagtttgtgcatgtttgaattgacggcgagtttgacagaattacggtgtcactcaaaatcagtgtcatcgtgattatgtcaaattc |
118 |
Q |
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| T |
6262009 |
ataactagtctagctagtttgtgcatgtttgaattgacggcgagtttgacagaatcacgatgtcactcaaaatcagtgtcatcgtgattatgtcaaaatc |
6261910 |
T |
|
| Q |
119 |
acggtgatttcaaataagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttccca |
218 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261909 |
acagtgatttcaaacaagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttccca |
6261810 |
T |
|
| Q |
219 |
gatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaac |
318 |
Q |
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| T |
6261809 |
gatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaac |
6261710 |
T |
|
| Q |
319 |
tcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccaccctccacctcccacgccaatcttcat |
418 |
Q |
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| T |
6261709 |
tcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccaccctccacctcccacgccaatcttcat |
6261610 |
T |
|
| Q |
419 |
ctcac |
423 |
Q |
| |
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||||| |
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| T |
6261609 |
ctcac |
6261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 151 - 341
Target Start/End: Complemental strand, 6270889 - 6270699
Alignment:
| Q |
151 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaaccca |
250 |
Q |
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|||||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||||||| || |
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| T |
6270889 |
gaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagaca |
6270790 |
T |
|
| Q |
251 |
taaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
341 |
Q |
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||||| | ||||| | |||||| ||| |||| || |||||||| || |||||||||| ||||||| ||||||||| || |||||||| |
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| T |
6270789 |
aaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
6270699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 17240693 - 17240728
Alignment:
| Q |
38 |
tgtgcatgtttgaattgacggcgagtttgacagaat |
73 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
17240693 |
tgtgcatgtttgaattgacggtgagtttgacagaat |
17240728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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