View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| ||||||||||||||||
Alignment Overview
Query: NF10152_4 (Length: 484)
Name: NF10152_4
Description: NF10152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| |||||
| ||||||
| ||||||
|
| ||||||
| ||||||
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 451
Target Start/End: Complemental strand, 29676306 - 29676113
Alignment:
| Q | 273 | gggctgtaatcagaaatggaacgtgatgggttggaccgtt---------aagcctgttgagaggtccctttccctactagtgtttatatatactgact-t | 362 | Q |
| |||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||| | ||| |||||||||||||| | | ||||
| T | 29676306 | gggctgtaatcagaaacggaccgtgatgggttggaccgtttctcaaagtaagcatgttgagaggtccctttccctattggtgcgtatatatactgactat | 29676207 | T |
 | ||||
| Q | 363 | c---ttaggtcagataactgcttgaaggaa-tctcattctaacagcat-agtaagggagagaagactctctcaaccttaacctctttctctaat | 451 | Q |
| | | |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 29676206 | cccatcaggtcagataactgcttgaaggcactctcattctaacagcatcagtaagggagagaagactctctcaaccttaacctctttctctaat | 29676113 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 53279192 - 53279272
Alignment:
| Q | 13 | aatatatacaccagttcttctagtttccttttggttagttttatataaacaacttaattacatgtatgacttaccgatttc | 93 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||
| T | 53279192 | aatatatacaccagttcttctagtttccttttggttagttttatataaacaacttaattacatgtaggacttaccgatttc | 53279272 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 53279312 - 53279382
Alignment:
| Q | 94 | aagtgtatggttgatgaggtacattaaataaattattttgtgttttaaggggacatcatctacatcgattt | 164 | Q |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
| T | 53279312 | aagtgtatggttgatgaggtacattaaataaattattttgtgttttaaggggatatcatctacatcgattt | 53279382 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 7054985 - 7054840
Alignment:
| Q | 311 | ttaagcctgttgagaggtccctttccctactagtgtttatatatactgactt---cttaggtcagataactgcttgaaggaa-tctcattctaacagcat | 406 | Q |
| ||||||||||||||| |||||||| |||||| ||| ||||||||||| ||| | | ||||||||||||||||||| | ||||||||||||||||| | ||||
| T | 7054985 | ttaagcctgttgagatgtcccttttcctactggtgcttatatatacttactatcccatcagtcagataactgcttgaagacactctcattctaacagcat | 7054886 | T |
| ||||
| Q | 407 | -agtaagggagagaagactctctcaaccttaacctctttctctaat | 451 | Q |
| | ||||||||||||||||||||||||||||||||||||||||||| | ||||
| T | 7054885 | cactaagggagagaagactctctcaaccttaacctctttctctaat | 7054840 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 3498856 - 3498817
Alignment:
| Q | 410 | aagggagagaagactctctcaaccttaacctctttctcta | 449 | Q |
| |||||||||||||||||||||||| |||||||||| |||| | ||||
| T | 3498856 | aagggagagaagactctctcaaccctaacctctttttcta | 3498817 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University