View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10152_low_2 (Length: 238)
Name: NF10152_low_2
Description: NF10152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10152_low_2 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 38310536 - 38310314
Alignment:
| Q |
16 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataacagcaatggtaatcatacgatacatgtgagatata |
115 |
Q |
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| T |
38310536 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataacagcaatggtaatcatacgatacatgtgagatata |
38310437 |
T |
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| Q |
116 |
taagatagcagtgacagagagagagaaaccaagtgaaataaggtgcaagaacaatacctgaaatatgttcccattcaagtagatttacatactagtttca |
215 |
Q |
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| T |
38310436 |
taagatagcagtgacagagagagagaaaccaagtgaaataaggtgcaagaacaatacctgaaatatgttcccattcaagtagatttacatactagtttca |
38310337 |
T |
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| Q |
216 |
tccaacattgaacattagaaaac |
238 |
Q |
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| T |
38310336 |
tccaacattgaacattagaaaac |
38310314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 38301761 - 38301721
Alignment:
| Q |
146 |
aagtgaaataaggtgcaagaacaatacctgaaatatgttcc |
186 |
Q |
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| T |
38301761 |
aagtgaaataaggtgcaagaacaatacccgaaatttgttcc |
38301721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 14473 - 14407
Alignment:
| Q |
16 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataaca |
82 |
Q |
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| T |
14473 |
aaagcagcatgctaaagttgctcaaactacaagcaacaacataggcccaattttgctggtaacaaca |
14407 |
T |
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