View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_high_10 (Length: 325)
Name: NF10153_high_10
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_high_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 41717669 - 41717344
Alignment:
| Q |
1 |
agtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaatgaaccacccaacaaaaggagcaagaatgcccaaggtgcatcatcaa |
100 |
Q |
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| T |
41717669 |
agtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaatgaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatcaa |
41717570 |
T |
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| Q |
101 |
atataaaaagtactccttaatttttaatgttgttcctt-nnnnnnnnnttattacacaaggtttccatctttatgtcttgatccttttataatctaaact |
199 |
Q |
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| T |
41717569 |
atataaaaagtactccttaatttttaatgttgttccttaaaaaaaaaattattagacaaggtttccatctttatgtcttgatccttttataatctaaact |
41717470 |
T |
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| Q |
200 |
nnnnnnntattgttgttggcttccttaannnnnnnattagacttatttatgcaattttacatttattatcataattatagtcaataatttcttatcagtt |
299 |
Q |
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||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41717469 |
aaaaaaatattgttcttggtttccttaatttttttattagacttatttatgcaattttacatttattatcataattatagttaataatttcttatcagtt |
41717370 |
T |
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| Q |
300 |
atgacacaaactaaagaagctacaat |
325 |
Q |
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||||||||||||| || ||||||||| |
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| T |
41717369 |
atgacacaaactagaggagctacaat |
41717344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41708597 - 41708499
Alignment:
| Q |
1 |
agtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaatgaaccacccaacaaaaggagcaagaatgcccaaggtgcatcatca |
99 |
Q |
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| T |
41708597 |
agtgaatatgagattgacaatgacactatggagcctaatactttgcaaacaaatgaaccacccaacaaaaggagcaagaatgctcaaggtgcatcatca |
41708499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 41707535 - 41707456
Alignment:
| Q |
247 |
tatgcaattttacatttatt-atcataattatagtcaataatttcttatcagttatgacacaaactaaagaagctacaat |
325 |
Q |
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||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
41707535 |
tatgcaattttacttttatttatcataattatagttaatagtttcttatcagttatgacacaaactagaggagctacaat |
41707456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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