View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_high_16 (Length: 267)

Name: NF10153_high_16
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_high_16
NF10153_high_16
[»] chr8 (10 HSPs)
chr8 (13-246)||(16629585-16629818)
chr8 (13-246)||(16638466-16638699)
chr8 (13-232)||(16629277-16629511)
chr8 (13-232)||(16638158-16638392)
chr8 (13-215)||(16617261-16617463)
chr8 (13-232)||(16628968-16629203)
chr8 (13-232)||(16637849-16638084)
chr8 (43-167)||(16792925-16793049)
chr8 (12-147)||(16790982-16791117)
chr8 (13-68)||(3574158-3574213)
[»] chr4 (1 HSPs)
chr4 (40-167)||(38877765-38877892)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 16629585 - 16629818
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16629585 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16629684  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16629685 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 16629784  T
Q  213 cacgcagtgattgaggtgaaatagttgtcatctg 246  Q
    ||| ||||| ||||||||||||||||||||||||    
T  16629785 cacccagtgcttgaggtgaaatagttgtcatctg 16629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 16638466 - 16638699
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16638466 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16638565  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16638566 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 16638665  T
Q  213 cacgcagtgattgaggtgaaatagttgtcatctg 246  Q
    ||||| ||| |||||||||||||| |||||||||    
T  16638666 cacgccgtgcttgaggtgaaatagatgtcatctg 16638699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16629277 - 16629511
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  16629277 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatg 16629376  T
Q  113 tagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttcta 197  Q
    ||||| |||||||| ||| |||||||||||||||               ||||||||||||||| | |||||||||| |||| ||||||||||| |||||    
T  16629377 tagttcaaacacttaagtagcgagactccaccttccgagaccccaccaacgggactaataaagggttgtatttcatcattcaaacgaacaacctcttcta 16629476  T
Q  198 tatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    |||| |||| |||||||||||||| || |||||||    
T  16629477 tatcgccgaatgctgcacgcagtgcttcaggtgaa 16629511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16638158 - 16638392
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  16638158 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatg 16638257  T
Q  113 tagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttcta 197  Q
    ||||| |||||||| ||| |||||||||||||||               ||||||||||||||| | |||||||||| |||| ||||||||||| |||||    
T  16638258 tagttcaaacacttaagtagcgagactccaccttccgagaccccaccaacgggactaataaagggttgtatttcatcattcaaacgaacaacctcttcta 16638357  T
Q  198 tatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    |||| |||| |||||||||||||| || |||||||    
T  16638358 tatcgccgaatgctgcacgcagtgcttcaggtgaa 16638392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 16617261 - 16617463
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||| | |||||  | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  16617261 caaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaatatcaaatg 16617360  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    || || |||||||| ||||| ||||| |||||||| |||||| |||||||||||||||| || |||| ||| ||||||||||| || || || |||||||    
T  16617361 taattgaaacacttcagtggtgagaccccaccttccggactagtaaaggttggtatttcgtcattcaaacggacaaccttttcaatgtcaccaactgctg 16617460  T
Q  213 cac 215  Q
    |||    
T  16617461 cac 16617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16628968 - 16629203
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatc-tagctgatgaaaatgcatcaatatcaaat 111  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  16628968 caaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaat 16629067  T
Q  112 gtagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttct 196  Q
    |||||| ||||||||||| |  |||||||||||||               ||||||||||||||| | | |||||||| |||| ||||||||||| ||||    
T  16629068 gtagttcaaacactttagcgaagagactccaccttccgggactccaccaacgggactaataaagggttgcatttcatcattcaaacgaacaacctcttct 16629167  T
Q  197 atatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    ||||| |||| |||||||||||||| || |||||||    
T  16629168 atatcaccgaatgctgcacgcagtgcttcaggtgaa 16629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16637849 - 16638084
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatc-tagctgatgaaaatgcatcaatatcaaat 111  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  16637849 caaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaat 16637948  T
Q  112 gtagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttct 196  Q
    |||||| ||||||||||| |  |||||||||||||               ||||||||||||||| | | |||||||| |||| ||||||||||| ||||    
T  16637949 gtagttcaaacactttagcgaagagactccaccttccgggactccaccaacgggactaataaagggttgcatttcatcattcaaacgaacaacctcttct 16638048  T
Q  197 atatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    ||||| |||| |||||||||||||| || |||||||    
T  16638049 atatcaccgaatgctgcacgcagtgcttcaggtgaa 16638084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 16792925 - 16793049
Alignment:
Q  43 ttttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatgtagttaaaacactttagtggcgagactcca 142  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||||||||  |||||| || ||| ||||||||||| ||||| |     
T  16792925 ttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatttaaatactttagtggcaagacttcg 16793024  T
Q  143 ccttcgggactaataaaggttggta 167  Q
    |||||| ||  ||||||||| ||||    
T  16793025 ccttcgagaacaataaaggtcggta 16793049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 16790982 - 16791117
Alignment:
Q  12 gcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaat 111  Q
    ||||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| |||||||||||||||||  ||||    
T  16790982 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaat 16791081  T
Q  112 gtagttaaaacactttagtggcgagactccaccttc 147  Q
    ||| || ||| ||||||||||| ||||| |||||||    
T  16791082 gtaatttaaatactttagtggcaagacttcaccttc 16791117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 3574158 - 3574213
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcat 68  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3574158 caaaggtggttggatcaaagacgcgacacattttccatcctgtgggaacaaatcat 3574213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 38877765 - 38877892
Alignment:
Q  40 gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatgtagttaaaacactttagtggcgagact 139  Q
    ||||||||||| ||||||||  |||||||| ||||||| ||||| ||||||||| |||||||||| |||||||||  | ||||||||||||| |  | |     
T  38877765 gcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaaattaaacactttagtgacaggtcc 38877864  T
Q  140 ccaccttcgggactaataaaggttggta 167  Q
     ||||||||||| || ||||||||||||    
T  38877865 acaccttcgggaatagtaaaggttggta 38877892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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