View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10153_high_18 (Length: 256)
Name: NF10153_high_18
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1011932 - 1011683
Alignment:
| Q |
1 |
gagcaacatatccaaaagtagacaaagaagtagtaaccaacacatcagataaacttagtagatacatatcaacccaagccttcatattatgcttattatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011932 |
gagcaacatatccaaaagtagacaaagaagtagtaaccaacacatcagataaacttagtagatacatatcaacccaagccttcatattatgcttattatc |
1011833 |
T |
|
| Q |
101 |
attaaatttttgttgctcttcaccacttgcttgatgaacttctattatttcccctgaagaagttgatttattcgtatacatcgtctttaaattatcaccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011832 |
attaaatttttgttgctcttcaccacttgcttgatgaacttctattatttcccctgaagaagttgatttattcgtatacatcgtctttaaattatcaccg |
1011733 |
T |
|
| Q |
201 |
tattctggatataaagacgcaacaagaacaaccttcacaatcgttttgtt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1011732 |
tattctggatataaagacgcaacaagaacaaccttcacaatcgttttgtt |
1011683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 1030046 - 1029805
Alignment:
| Q |
2 |
agcaacatatccaaaagtagacaaagaagtagtaaccaacacatcagataaacttagtagata--catatcaacccaagccttcatattatgctt----- |
94 |
Q |
| |
|
||||||||| |||||||||| | ||||||| ||||| ||||| ||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
1030046 |
agcaacataatcaaaagtagattgataagtagttaccaatacatcggataaacttagtaaatatacatatcaacccaagtcttcatattatgctatgctg |
1029947 |
T |
|
| Q |
95 |
attatcattaaatttttgttgctcttcaccacttgcttgatgaacttctattatttcccctgaagaagttgatttattcgtatacatcgtctttaaatta |
194 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| ||||| ||| || |||| |||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
1029946 |
attgtcattaaatttttgttgttcttcaccacttggttgataaacctcaattacttccccaataacttttgatttattcatatacatcatctttaaatta |
1029847 |
T |
|
| Q |
195 |
tcaccgtattctggatataaagacgcaacaagaacaaccttc |
236 |
Q |
| |
|
|| || |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1029846 |
tcgccatattgtggatataaagacgccacaagaacaaccttc |
1029805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 6937840 - 6938080
Alignment:
| Q |
2 |
agcaacatatccaaaagtagacaaagaagtagtaaccaacacatcagataaacttagtagatacatatcaacccaagccttcatattatgcttattatca |
101 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| ||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6937840 |
agcaacataaccaaaagtagattgataagtagtcaccaatacatccgataaacttagtaaataaatatcaacccacgccttcatattatgcttattatca |
6937939 |
T |
|
| Q |
102 |
ttaaatttttgttgctcttcaccacttgcttgatgaacttctattatttcccctgaagaagttgatttattcgtatacatcgtctttaaattatcaccgt |
201 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||| || |||| |||||| | |||||||||||| ||||| || |||||||||| ||||| | |
|
|
| T |
6937940 |
ttaaacttttgttgctcttcaccacttggttgataaacctcaattacttccccgctaaccgttgatttattcatatacgtcatctttaaattttcaccat |
6938039 |
T |
|
| Q |
202 |
attctggatataaagacgcaacaagaacaaccttcacaatc |
242 |
Q |
| |
|
| | | |||||| ||||| ||||||||| |||||| |||| |
|
|
| T |
6938040 |
aatgtcgatatagagacgatacaagaacagccttcataatc |
6938080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University