View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_high_5 (Length: 414)
Name: NF10153_high_5
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 126 - 404
Target Start/End: Original strand, 9825993 - 9826265
Alignment:
| Q |
126 |
attttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgatgctttcacggtaaggccccacatgtacagttaaacaa |
225 |
Q |
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| T |
9825993 |
attttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgatgctttcacggtaaggccccaca------gttaaacaa |
9826086 |
T |
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| Q |
226 |
aagattccgtcgcaaaaggcaactatgctaatactatcatcaaaatagttttcatcatggagagggaatgtgatctctgtggcgtcgatggtggtgcaac |
325 |
Q |
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| T |
9826087 |
aagattccgtcgcaaaaggcaactatgctaatacgatcatcaaaatagttttcaccatggagagggaatgtgatctctgtggcgtcgatggtggtgcaac |
9826186 |
T |
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| Q |
326 |
tggtgaagaatgttcgcagaggataaatagagaagtcggatggattgttctcggattgtctaatgagactatggttcat |
404 |
Q |
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| T |
9826187 |
tggtgaagaatgttcgcagaggataaatagagaagtcggatggattgttctcggattgttgaatgagactatggttcat |
9826265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 9820331 - 9820393
Alignment:
| Q |
126 |
attttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgat |
188 |
Q |
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| T |
9820331 |
attttcttccaaaggaggcaatatgttatattttctaatggaagggttccacaaaacagcgat |
9820393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 9820214 - 9820264
Alignment:
| Q |
21 |
aacagcaacaactttgtaattatccgttatattatcatagccaaagccata |
71 |
Q |
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| T |
9820214 |
aacagcaacaactttgtaattatccattatattatcatagccaaagccata |
9820264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 9825894 - 9825944
Alignment:
| Q |
21 |
aacagcaacaactttgtaattatccgttatattatcatagccaaagccata |
71 |
Q |
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| T |
9825894 |
aacagcaacaactttgtaattatccattatattatcatagccaaagccata |
9825944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 9820412 - 9820501
Alignment:
| Q |
219 |
taaacaaaagattccgtcgcaaaaggcaactatgctaatactatcatcaaaatagttttcatcatggagagggaatgtgatctctgtggc |
308 |
Q |
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| T |
9820412 |
taaacaaaggattccgtcataagaggaaactatgagaataccattagtaaaacagttttcaccgtggagagggaatgttatctctgtggc |
9820501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 771953 - 772006
Alignment:
| Q |
132 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagc |
185 |
Q |
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| T |
771953 |
ttccaaaggaggcaatatcttgaatttttgaatggaagggttccacaaaacagc |
772006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 9595048 - 9595099
Alignment:
| Q |
132 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaaca |
183 |
Q |
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| T |
9595048 |
ttccaaaggaggcaataacttaaattttctaatggaagggttccacaaaaca |
9595099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 2635319 - 2635273
Alignment:
| Q |
132 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccaca |
178 |
Q |
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| T |
2635319 |
ttccaaagggggcaataacttacattttctaatggaagggttccaca |
2635273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 2455470 - 2455417
Alignment:
| Q |
132 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagc |
185 |
Q |
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||||||||| |||||||| || ||| || |||||||||||||||||||||||| |
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| T |
2455470 |
ttccaaaggaggcaatatcttgaattctccaatggaagggttccacaaaacagc |
2455417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 2474750 - 2474701
Alignment:
| Q |
132 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaa |
181 |
Q |
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| T |
2474750 |
ttccaaaggaggcaataacttaaattttccaatggaagggttccacaaaa |
2474701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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