View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_high_6 (Length: 410)

Name: NF10153_high_6
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_high_6
NF10153_high_6
[»] chr1 (3 HSPs)
chr1 (170-400)||(8151917-8152146)
chr1 (19-169)||(27242659-27242810)
chr1 (324-400)||(52240764-52240840)
[»] chr7 (2 HSPs)
chr7 (19-169)||(9356630-9356785)
chr7 (312-389)||(22382416-22382493)
[»] chr3 (4 HSPs)
chr3 (19-170)||(44052713-44052869)
chr3 (19-169)||(54536912-54537068)
chr3 (19-169)||(44351994-44352149)
chr3 (138-169)||(18321814-18321845)
[»] chr8 (4 HSPs)
chr8 (23-169)||(9600095-9600246)
chr8 (55-169)||(28395622-28395734)
chr8 (18-80)||(28395556-28395620)
chr8 (312-389)||(13795151-13795228)
[»] chr2 (2 HSPs)
chr2 (79-169)||(1288643-1288733)
chr2 (19-169)||(1198189-1198338)
[»] chr4 (2 HSPs)
chr4 (93-169)||(17626794-17626868)
chr4 (343-400)||(45002244-45002300)
[»] chr6 (2 HSPs)
chr6 (325-393)||(6876626-6876693)
chr6 (312-376)||(10329135-10329199)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 170 - 400
Target Start/End: Complemental strand, 8152146 - 8151917
Alignment:
Q  170 tctactactaataccactacttaaatttttggtatcacgtcaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 269  Q
    |||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152146 tctactactagtactactacttaaatttttggtatgacgttaagtgtgtgagaatcatgattagcatagtttttaaaagttacattatgtaatttttata 8152047  T
Q  270 acattatggtagggtggaagtgcagtaagtcactttcgacgaaaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 369  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152046 acattatggtagggtggaagtgctgtaagtcactttcgacga-aaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcat 8151948  T
Q  370 cataaagttttgcgtctaccgtctctgcttc 400  Q
    |||||||||| ||||||||||||| ||||||    
T  8151947 cataaagtttcgcgtctaccgtctttgcttc 8151917  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 27242659 - 27242810
Alignment:
Q  19 tgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttatttat 116  Q
    ||||||||||||| |||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  27242659 tgaggatggagaggagagggggtaccgagagagagcagacaaaaataatcaggggaattcaagggtactatagtaattttcagtatacaaattt-ttttt 27242757  T
Q  117 ttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27242758 ttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctg 27242810  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 52240764 - 52240840
Alignment:
Q  324 aattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctctgcttc 400  Q
    |||||||||| |||||   |||||||||||| |||||||||||||||||||||| | ||||||||| ||| ||||||    
T  52240764 aattgtaaagctgtatcaggaagtgttgaacccatgttgtaagcatcataaagtctcgcgtctaccatctttgcttc 52240840  T

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Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 9356630 - 9356785
Alignment:
Q  19 tgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatt---tatt 113  Q
    ||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||    
T  9356630 tgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttatttt 9356729  T
Q  114 tatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  9356730 tatttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctg 9356785  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 22382493 - 22382416
Alignment:
Q  312 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctacc 389  Q
    ||||||| |||  ||||||||| ||| ||  |||||||||||||||| |||||||||||||||||  | |||||||||    
T  22382493 aaaaatagtgtacattgtaaagctgtgtgaggaagtgttgaactcatattgtaagcatcataaagcatcgcgtctacc 22382416  T

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Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 44052713 - 44052869
Alignment:
Q  19 tgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa---tttatt 113  Q
    ||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||    
T  44052713 tgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttttttt 44052812  T
Q  114 tatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctgt 170  Q
    | |||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  44052813 tttttttattggggggtgccacagcacctgggggtctcaatagagatccgcccctgt 44052869  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 54536912 - 54537068
Alignment:
Q  19 tgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa--tttattt 114  Q
    ||||||||||||| |||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  54536912 tgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcagggaaattcaagggtactatagtaattttcagtatacaaatttttattt 54537011  T
Q  115 atttttagtggggggtgccaca--acacctgggggtctcaatagagatccgcccctg 169  Q
     |||||| ||||||||||||||  || ||||||||||||||||||||||||||||||    
T  54537012 ttttttattggggggtgccacagcacccctgggggtctcaatagagatccgcccctg 54537068  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 44352149 - 44351994
Alignment:
Q  19 tgaggatggagagaagagagggtaccgagagag--cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa--tttattt 114  Q
    ||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| |||    
T  44352149 tgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatggtaattttcagtatacaaattttttttt 44352050  T
Q  115 atttttagt-ggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
     |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  44352049 ttttttattgggggggtgccacagcacctgggggtctcaatagagatccgcccctg 44351994  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 169
Target Start/End: Complemental strand, 18321845 - 18321814
Alignment:
Q  138 cacctgggggtctcaatagagatccgcccctg 169  Q
    ||||||||||||||||||||||||||||||||    
T  18321845 cacctgggggtctcaatagagatccgcccctg 18321814  T

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Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 9600095 - 9600246
Alignment:
Q  23 gatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaa-tttattt--att 117  Q
    ||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||    
T  9600095 gatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaattttattttattt 9600194  T
Q  118 tttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  9600195 tttattggggggtgccacaacacctgagggtctcaatagagatccgcccctg 9600246  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 28395622 - 28395734
Alignment:
Q  55 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaat 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||| |||||||||||||||||    
T  28395622 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatt--tttttttttattggggggtgccacagcacctgggggtctcaat 28395719  T
Q  155 agagatccgcccctg 169  Q
    |||||||||||||||    
T  28395720 agagatccgcccctg 28395734  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 28395556 - 28395620
Alignment:
Q  18 atgaggatggagagaagagagggtaccgaga--gagcagacaaaaacaatcaggggaattcaagg 80  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  28395556 atgaggatggagaggagagggggtaccgagagagagcagacaaaaacaatcaggggaattcaagg 28395620  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 13795228 - 13795151
Alignment:
Q  312 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctacc 389  Q
    ||||||| || | ||||||||| ||||| | |||||||||||||||||||||||| |||||||||  | |||||||||    
T  13795228 aaaaatagtgcgcattgtaaagatgtatagggaagtgttgaactcatgttgtaagtatcataaagcctcgcgtctacc 13795151  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 1288643 - 1288733
Alignment:
Q  79 gggtactatagtaattttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
    ||||||||||||| |||||||||||||||||  | | |||||| | |||||||||||  ||||||||||||||||||||||||||||||||    
T  1288643 gggtactatagtagttttcagtatacaaattattatttttttactagggggtgccacggcacctgggggtctcaatagagatccgcccctg 1288733  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 1198189 - 1198338
Alignment:
Q  19 tgaggatggagagaagagagggtaccgagagag---cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaaatttattta 115  Q
    ||||||||| ||| |||| ||||||||||||||   |||||||||||||    | |||| || |||||| |||||| ||||||| |||||||||| |||     
T  1198189 tgaggatggggaggagagggggtaccgagagagagacagacaaaaacaagt--gtgaatccaggggtacgatagtagttttcagcatacaaattttttt- 1198285  T
Q  116 tttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
     ||||| |  ||| ||||||  |||||||||||||||||||||||||| |||||    
T  1198286 -ttttactaagggatgccacggcacctgggggtctcaatagagatccgtccctg 1198338  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 17626794 - 17626868
Alignment:
Q  93 ttttcagtatacaaatttatttatttttagtggggggtgccacaacacctgggggtctcaatagagatccgcccctg 169  Q
    |||||||||| ||||||| |||  ||||| | |||||||||||   |||||||||||||||||||||||||||||||    
T  17626794 ttttcagtattcaaattttttt--ttttattagggggtgccacggaacctgggggtctcaatagagatccgcccctg 17626868  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 45002300 - 45002244
Alignment:
Q  343 gaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtctctgcttc 400  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||| ||| ||||||    
T  45002300 gaagtgttgaacctatgttgtaagcatcataaag-ttcgcgtctaccatctttgcttc 45002244  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 6876626 - 6876693
Alignment:
Q  325 attgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaagttttgcgtctaccgtct 393  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||   | |||||||||||||    
T  6876626 attgtcaagttgtatgggga-gtcttgaactcatgttgtaagcatcataaaacctcgcgtctaccgtct 6876693  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 10329135 - 10329199
Alignment:
Q  312 aaaaataatgtgaattgtaaagttgtatggagaagtgttgaactcatgttgtaagcatcataaag 376  Q
    ||||||| || | ||||||||| ||| ||| |||||||| ||| |||||||||||||||||||||    
T  10329135 aaaaatagtgcgcattgtaaagatgtgtggggaagtgttaaacccatgttgtaagcatcataaag 10329199  T

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