View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_low_1 (Length: 889)

Name: NF10153_low_1
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_low_1
NF10153_low_1
[»] chr4 (7 HSPs)
chr4 (16-557)||(21614527-21615076)
chr4 (595-876)||(21615116-21615397)
chr4 (656-832)||(31178040-31178216)
chr4 (253-360)||(5820175-5820282)
chr4 (20-161)||(34855857-34856005)
chr4 (176-335)||(5693235-5693396)
chr4 (42-96)||(48961947-48962001)
[»] chr8 (3 HSPs)
chr8 (95-387)||(12104792-12105087)
chr8 (224-346)||(3663658-3663782)
chr8 (54-161)||(27805858-27805973)
[»] chr5 (6 HSPs)
chr5 (149-389)||(18018707-18018948)
chr5 (21-163)||(31375364-31375514)
chr5 (20-159)||(20473815-20473962)
chr5 (21-96)||(22035676-22035751)
chr5 (21-96)||(22038902-22038977)
chr5 (16-189)||(43104112-43104292)
[»] chr3 (7 HSPs)
chr3 (219-343)||(7555511-7555637)
chr3 (149-329)||(26272622-26272805)
chr3 (20-207)||(23048678-23048871)
chr3 (21-96)||(10558264-10558339)
chr3 (24-96)||(28716987-28717059)
chr3 (21-163)||(17545030-17545179)
chr3 (251-328)||(18536585-18536662)
[»] chr1 (10 HSPs)
chr1 (209-346)||(14961355-14961494)
chr1 (149-343)||(17336652-17336849)
chr1 (149-236)||(42591167-42591254)
chr1 (21-96)||(14159519-14159594)
chr1 (21-96)||(28139066-28139141)
chr1 (21-96)||(28142317-28142392)
chr1 (20-163)||(8434896-8435048)
chr1 (18-162)||(26639746-26639898)
chr1 (29-161)||(25663317-25663457)
chr1 (29-96)||(1941557-1941624)
[»] chr2 (5 HSPs)
chr2 (173-294)||(23258532-23258655)
chr2 (20-161)||(3252067-3252216)
chr2 (21-96)||(35076731-35076806)
chr2 (21-96)||(35079989-35080064)
chr2 (29-96)||(6277390-6277457)
[»] chr7 (7 HSPs)
chr7 (21-162)||(7570088-7570237)
chr7 (21-162)||(7576503-7576652)
chr7 (21-96)||(1633909-1633984)
chr7 (21-96)||(1637154-1637229)
chr7 (29-163)||(18970818-18970960)
chr7 (21-96)||(44673249-44673324)
chr7 (94-163)||(18974057-18974126)
[»] chr6 (2 HSPs)
chr6 (34-159)||(11184297-11184430)
chr6 (42-96)||(27315696-27315750)


Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 21614527 - 21615076
Alignment:
16 acatcataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcatta--------cgcacaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||    
21614527 acatcataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcataaaatcatcacgcacaatt 21614626  T
108 tatgctgaataaacgagaataacaatcataataattcagagttacatattacatggcaaaaaagctagaacaaaatcatctcagacctaataaattgaaa 207  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
21614627 tatactgaataaactagaataacaatcataataattcagagttacatattacatggcaaaaaagctagaacaaaataatctcagacctaataaattgaaa 21614726  T
208 cttagctattgatggctaatgcacaaataactattaaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
21614727 cttagctattgatggctaatgcacaaataactattaaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaaaccaccacgaaat 21614826  T
308 ctgcaatccttggctccaaatgtgtcttcaatctcccaagaagccgaacccttttttcagaaacgtgttcggcttttatagattttaattctgtgacgtc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
21614827 ctgcaatccttggctccaaatgtgtcttcaatctcccaagaagccgaacccttttttcataaacgtgtttggcttttatagattttaattctgtgacgtc 21614926  T
408 aaaatcatggcccgatttgaagaaatcgtgacccgattttgcattaactgcatcatcaatcagacgctcctccaaaatcgtggcccgatttttctcttcc 507  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21614927 aaaatcgtggcccgatttgaagaaatcgtgatccgattttgcattaactgcatcatcaatcagacgctcctccaaaatcgtggcccgatttttctcttcc 21615026  T
508 acaacattatttttctgtccttttttagcctctagcacctatgaactcat 557  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||    
21615027 tcaacattatttttctgtccttttttaacctctagcacctatgaactcat 21615076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 595 - 876
Target Start/End: Original strand, 21615116 - 21615397
Alignment:
595 gatgatatgacctagtgtcatcataagacctagtagtgtccttgaacccttctccttcctcatcaaataaacatgagaaatggatcgaacaatttgggat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21615116 gatgatatgacctagtgtcatcataagacctagtagtgtccttgaacccttctccttcctcatcaaataaacatgagaaatggatcgaacaatttgggat 21615215  T
695 atcatacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagagttcattgaattgttccatgttgccggagacaaacctttc 794  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
21615216 atcatacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagagttcattgaattgttccatgtttccggagacaaacctttc 21615315  T
795 aacctaaatattaaacattttgctcacttaactaatgattgaacttatattacagttttaaagatatgaaataatttaattc 876  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21615316 aacctaagtattaaacattttgctcacttaactaatgattgaacttatattacagttttaaagatatgaaataatttaattc 21615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 656 - 832
Target Start/End: Complemental strand, 31178216 - 31178040
Alignment:
656 atcaaataaacatgagaaatggatcgaacaatttgggatatcatacaaagatgctgcagataacgaaaaacgtttgcaaatattcaagaacaatgtagag 755  Q
    ||||||||||||||||||||||||   ||||||||| | ||| ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||    
31178216 atcaaataaacatgagaaatggatgacacaatttggaaaatcttacaaagatgctgcagagaaggaaaaacgttttcaaatattcaagaataatgtggag 31178117  T
756 ttcattgaattgttccatgttgccggagacaaacctttcaacctaaatattaaacattttgctcacttaactaatga 832  Q
    ||||||||||||||| ||| ||  ||| |||||||||||||||| | |||||| ||||||||| || ||||||||||    
31178116 ttcattgaattgttcaatgctgttggaaacaaacctttcaaccttagtattaaccattttgctgacctaactaatga 31178040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 253 - 360
Target Start/End: Complemental strand, 5820282 - 5820175
Alignment:
253 aacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaatgtgtcttcaatctcccaagaagcc 352  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||| || ||    
5820282 aacattatatgaatttgggactgactatgagttggatgacaagccaccacgaaatctgcaatccttagtttcaaatgtgtcttcaatctcccaaaaaacc 5820183  T
353 gaaccctt 360  Q
     |||||||    
5820182 aaaccctt 5820175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 34855857 - 34856005
Alignment:
20 cataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtc-------agaatcattacgcacaatttatgc 112  Q
    |||||||| |||  || |||||||| |||||| ||||||| ||| ||||||| |||||| ||| |||||       | || ||||||||| ||||||| |    
34855857 cataaatatgtctgagatataagctggtgtcattagtcatgtaatctctaagatcaattttattgggtcgaatcataaaagcattacgcataatttatac 34855956  T
113 tgaataaacgagaataacaatcataataattcagagttacatattacat 161  Q
    |||||||||   ||||||| |||| ||||||||||||||||||||||||    
34855957 tgaataaactgaaataacattcatgataattcagagttacatattacat 34856005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 335
Target Start/End: Complemental strand, 5693396 - 5693235
Alignment:
176 aacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaataacta--ttaaaagaaaacaacattacatgaatttgggac 273  Q
    ||||||||||| | ||||||||| |    ||| ||||||| | |||||||| ||||||||||  |  |||||  || ||||||||||||||| |  || |    
5693396 aacaaaatcatattagacctaatcacgaaaaatttagctactcatggctaaagcacaaataatcagattaaataaagacaacattacatgaaatatggtc 5693297  T
274 tcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaatgtgtctt 335  Q
    | ||||||| |||||||||| || ||||| || || ||||| ||| ||||||||||||||||    
5693296 taactatgacttggatggcatgcgaccacaaattccgcaatgcttagctccaaatgtgtctt 5693235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 48961947 - 48962001
Alignment:
42 gctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||| |||||||||||||||||||||    |||||||||| |||||||||||||    
48961947 gctagcgtcagtagtcatataaactcttgaatcaattatattgggtcagaatcat 48962001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 95 - 387
Target Start/End: Original strand, 12104792 - 12105087
Alignment:
95 attacgcacaatttatgctgaataaacgagaataacaatcataataattcagagttacatattacatggcaaaaaagctagaacaaaatcatctcagacc 194  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||    
12104792 attacgcacaatttatattgaataaactagaataacaatcataataattcagagttacaaattacatggccaaaaagctagaacagaatcatctcagacc 12104891  T
195 taataaattgaaacttagctattgatggctaatgcacaaataact--attaaaagaaaacaacattacatgaatttgggactcactatgagttggatggc 292  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||||||||     
12104892 taatcaattgaaacttagctactcatgactaatgcacaaataactagattaaaagaaaacaacattacatgaatttgggactggctatgagttggatggt 12104991  T
293 aagccaccacgaaatctgcaatccttggctccaaatgtgtcttcaatct-cccaagaagccgaacccttttttcagaaacgtgttcggcttttata 387  Q
    ||||||||| ||||| |||| ||||||  ||||||||||||| |||||| ||||| || | ||||||||  |||| ||||||||| ||||||||||    
12104992 aagccaccatgaaatttgcagtccttgaatccaaatgtgtctccaatctccccaaaaatcagaacccttgcttcataaacgtgtttggcttttata 12105087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 3663658 - 3663782
Alignment:
224 taatgcacaaataactatt--aaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggc 321  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||| ||    
3663658 taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatccttagc 3663757  T
322 tccaaatgtgtcttcaatctcccaa 346  Q
    | |||||||||||||||| ||||||    
3663758 ttcaaatgtgtcttcaatatcccaa 3663782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 27805858 - 27805973
Alignment:
54 agtcatataaactctaagctcaattatatcgggtcagaatcat--------tacgcacaatttatgctgaataaacgagaataacaatcataataattca 145  Q
    |||||||||| ||||||| |||||||||| || ||||||||||        |||||||||||||| |||||||| | ||||||||| |||| ||||||||    
27805858 agtcatataatctctaagatcaattatattggatcagaatcataaaagcattacgcacaatttatactgaataacctagaataacattcatgataattca 27805957  T
146 gagttacatattacat 161  Q
    |||||| | |||||||    
27805958 gagttatagattacat 27805973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 1e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 149 - 389
Target Start/End: Complemental strand, 18018948 - 18018707
Alignment:
149 ttacatattacatggcaaaaaagctagaacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaataacta--ttaaaa 246  Q
    |||||||||| || |  |||||||||||| | |||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||| ||  ||||||    
18018948 ttacatattatatagacaaaaagctagaatataatcatcttagacctaatcaattgaaacttagctactcatggctaatgcacaaataaatagattaaaa 18018849  T
247 gaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaatgtgtcttcaatctcccaa 346  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
18018848 gaaaacaacattacttgaatttgg-actgactatgagttggatggcaagtcaccacgaaatctgcaatcctcggctccaaatgtgtcttcaatctcccaa 18018750  T
347 gaagccgaacccttttttcagaaacgtgttcggcttttataga 389  Q
     |    ||||||||  |||||||||||||  ||||||||||||    
18018749 aacctagaacccttgcttcagaaacgtgtatggcttttataga 18018707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 31375514 - 31375364
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat--------tacgcacaatttatgc 112  Q
    ||||||| |||  ||||||||||| ||||||| |||| ||||| ||||||| |||||||||  |||||||||||||        |||||||||||||| |    
31375514 ataaataagtctgagttataagctggtgtcagcagtcctataatctctaagatcaattataatgggtcagaatcataaaagcattacgcacaatttatac 31375415  T
113 tgaataaacgagaataacaatcataataattcagagttacatattacatgg 163  Q
    | ||||| | ||||||||  |||||||||||||||| |||| |||||||||    
31375414 taaataacctagaataactttcataataattcagagctacagattacatgg 31375364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 20473815 - 20473962
Alignment:
20 cataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat--------tacgcacaatttatg 111  Q
    |||||||| |||  ||||||||||| ||||||| ||||||| || |||||||  ||||||||| | |||||||||||        ||| ||||||||||     
20473815 cataaatatgtctgagttataagctggtgtcagcagtcatacaatctctaagaacaattatattgagtcagaatcataaaagcattacacacaatttata 20473914  T
112 ctgaataaacgagaataacaatcataataattcagagttacatattac 159  Q
    |||||||||| ||||||||  |||||||||||||||| |||| |||||    
20473915 ctgaataaactagaataactttcataataattcagagctacagattac 20473962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 22035751 - 22035676
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
22035751 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 22035676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 22038977 - 22038902
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
22038977 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 22038902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 43104112 - 43104292
Alignment:
16 acatcataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatt 107  Q
    |||| ||||||| |||| |||| || |||||||||||| |||||||| |||||||  |||||||||| |||||| |||        ||||| | ||||||    
43104112 acattataaatatgtcagagttttacgctagtgtcagtggtcatatatactctaaaatcaattatattgggtcaaaatcataaaagcattaagaacaatt 43104211  T
108 tatgctgaataaacgagaataacaatcataataattcagagttacatattacatggcaaaaa--agctagaacaaaatcatctc 189  Q
    ||| |||||||||| ||||| ||| ||||||  ||| |||||||||  ||||||   ||| |  ||||||||||||||||||||    
43104212 tatactgaataaactagaatgacattcataaagattaagagttacaggttacat---aaacatgagctagaacaaaatcatctc 43104292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 7555511 - 7555637
Alignment:
219 atggctaatgcacaaataacta--ttaaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatcc 316  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||| ||| ||||||||||||||||    
7555511 atggataatgcacaaataactaaattaaaagaaaacaacattacatgaacttgggactgactttgagttggatgacaaggcactacgaaatctgcaatcc 7555610  T
317 ttggctccaaatgtgtcttcaatctcc 343  Q
    | ||||||||||| |||||||||||||    
7555611 tcggctccaaatgcgtcttcaatctcc 7555637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 149 - 329
Target Start/End: Complemental strand, 26272805 - 26272622
Alignment:
149 ttacatattacat-ggcaaaaaagctagaacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaataacta--ttaaa 245  Q
    ||||||||||||| || ||||||  ||||||||| |||||| ||| ||||| ||   ||| ||||||| | |||| |||||||||||||||||  |||||    
26272805 ttacatattacattggtaaaaaacttagaacaaattcatctaagatctaatcaaagaaaatttagctactcatggttaatgcacaaataactaaattaaa 26272706  T
246 agaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaatg 329  Q
    ||||||||||||| ||||||||||||| | |||||||||||||||| || ||||||| ||||||||||||||  ||||||||||    
26272705 agaaaacaacattgcatgaatttgggattgactatgagttggatggaaaaccaccacaaaatctgcaatcctctgctccaaatg 26272622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 23048871 - 23048678
Alignment:
20 cataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatttatg 111  Q
    |||||||| |||| ||||||||||| ||||||| ||||||| || ||||||| |||||||||| ||||||||||        |||||||||||||||||     
23048871 cataaatatgtcagagttataagctggtgtcagcagtcatacaatctctaagatcaattatattgggtcagaatcataaaagcattacgcacaatttata 23048772  T
112 ctgaataaacgagaataacaatcataataattcagagttacatattacatggcaaaaaagctagaacaaaatcatctcagacctaataaattgaaa 207  Q
    |||||| |||  |||||||| |||| |||||||||||||||| ||||||| |   |  |||||||||||||||||||  |||||||| ||| ||||    
23048771 ctgaat-aacctgaataacattcatgataattcagagttacagattacatag-tcatgagctagaacaaaatcatctatgacctaatcaatagaaa 23048678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 10558264 - 10558339
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||| ||||||    
10558264 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcataatcat 10558339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 28716987 - 28717059
Alignment:
24 aataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    |||| |||||||||||||||| |||||| ||||||||||| |||||   |||||||||| |||| ||||||||    
28716987 aataagtcaaagttataagctggtgtcaatagtcatataatctctagaatcaattatattgggttagaatcat 28717059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 17545030 - 17545179
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat--------tacgcacaatttatgc 112  Q
    ||||||| |||  ||||||||||| ||||||  |||| ||||| ||||||  |||||||||| |||||| ||||||        ||| |||||||||| |    
17545030 ataaataagtctgagttataagctggtgtcaacagtcctataatctctaaaatcaattatattgggtcataatcataaaagcattacacacaatttatac 17545129  T
113 tgaataaacgagaataacaatcataataattcagagttacatattacatgg 163  Q
    ||||||| | ||||||||  |||||||||||||||| |||| |||| ||||    
17545130 tgaataa-ctagaataactttcataataattcagagctacagattaaatgg 17545179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 18536662 - 18536585
Alignment:
251 acaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaat 328  Q
    ||||||||||||||| |  || || ||||||| |||||||| | |||||||| || ||||||| |||| |||||||||    
18536662 acaacattacatgaaatatggtctaactatgacttggatggtatgccaccacaaattctgcaacccttagctccaaat 18536585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 14961494 - 14961355
Alignment:
209 ttagctattgatggctaatgcacaaataactatt--aaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaa 306  Q
    ||||||| | |||||||||||||||||||||| |  ||||||||||||||||||||||| ||  |||| | | |||||||||||| |||||||||| |||    
14961494 ttagctagtcatggctaatgcacaaataactaatgtaaaagaaaacaacattacatgaaattaagactgaatttgagttggatgggaagccaccacaaaa 14961395  T
307 tctgcaatccttggctccaaatgtgtcttcaatctcccaa 346  Q
    |||||||||||  ||| |||||||||||||||||| ||||    
14961394 tctgcaatcctaagcttcaaatgtgtcttcaatctaccaa 14961355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 149 - 343
Target Start/End: Complemental strand, 17336849 - 17336652
Alignment:
149 ttacatattacatggcaaaaaagct-agaacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaataacta--ttaaa 245  Q
    ||||||||||||| |   ||||||| |||||||| |||||  |||| |||| |||  ||||||| ||| | | ||||||||||||||||||||  |||||    
17336849 ttacatattacattggtcaaaagcttagaacaaattcatccaagacttaatcaatgaaaacttaactactcaaggctaatgcacaaataactagattaaa 17336750  T
246 agaaaacaacattacatgaatttgggactcactatgagttggatggcaagccaccacgaaatctgcaatccttggctccaaatgtgtcttcaatctcc 343  Q
    |||||||| |||||||||| ||| | ||| | |||| |||  || |||||||||||| |||| || ||||||   |||||||||||||||||||||||    
17336749 agaaaacagcattacatgagttttgaactgattatgtgttaaatagcaagccaccacaaaatatgtaatcctcaactccaaatgtgtcttcaatctcc 17336652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 42591167 - 42591254
Alignment:
149 ttacatattacatggcaaaaaagctagaacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaata 236  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||  ||| |||||||||||||||| |  |||||||||||||||||    
42591167 ttacaaattacatggccaaaaaactagaacagaatcatctcagactcaatcaattgaaacttagctactcgtggctaatgcacaaata 42591254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 14159519 - 14159594
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||||| ||||||||||||||||||||| |||||||  ||| |||||| |||||||||||||    
14159519 ataaatatgtcagagttatacgctagtgtcagtagtcatatatactctaaaatcagttatattgggtcagaatcat 14159594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28139066 - 28139141
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
28139066 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 28139141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28142317 - 28142392
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
28142317 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 28142392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 8435048 - 8434896
Alignment:
20 cataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattata-tcgggtcagaat--------cattacgcacaatttat 110  Q
    |||||||| |||  ||||||||||| ||||||| |||| ||||| ||||||| ||||||||| | ||||||||||        |||||| | |||| |||    
8435048 cataaataagtctgagttataagctggtgtcagcagtcctataatctctaagatcaattatattggggtcagaatcataaaagcattacacgcaatctat 8434949  T
111 gctgaataaacgagaataacaatcataataattcagagttacatattacatgg 163  Q
     |||||||||| | ||||||  |||||||||||||||| |||| |||||||||    
8434948 actgaataaactataataactttcataataattcagagctacacattacatgg 8434896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 26639746 - 26639898
Alignment:
18 atcataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaattta 109  Q
    ||||||||||| ||||||||||||| | ||||||| | |||||||| || |||| |||||| ||| || |||||||        ||||| ||||||||||    
26639746 atcataaatagatcaaagttataagttggtgtcagcaatcatataatctataagttcaattgtattggttcagaatcataaaagcattaggcacaattta 26639845  T
110 tgctgaataaacgagaataacaatcataataa-ttcagagttacatattacatg 162  Q
    | |  ||||||| ||||||  ||||||||||| || ||||||||||||||||||    
26639846 tac-aaataaactagaatagtaatcataataattttagagttacatattacatg 26639898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 25663317 - 25663457
Alignment:
29 gtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcag--------aatcattacgcacaatttatgctgaataaa 120  Q
    |||| ||||| | ||||||||||||||||||||| |||||||  ||| |||||| |||||||        || ||||| | ||||||||| |||||||||    
25663317 gtcagagttacacgctagtgtcagtagtcatatatactctaaaatcatttatattgggtcagaaacataaaagcattaagaacaatttatactgaataaa 25663416  T
121 cgagaataacaatcataataattcagagttacatattacat 161  Q
    | ||||| ||| ||||||  ||| |||||||||| ||||||    
25663417 ctagaatgacattcataaagattaagagttacatgttacat 25663457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 1941624 - 1941557
Alignment:
29 gtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    |||| ||||| | |||||||||||||||||||||||||||    |||||||||| ||||| |||||||    
1941624 gtcagagttacatgctagtgtcagtagtcatataaactcttgaatcaattatattgggtccgaatcat 1941557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 23258655 - 23258532
Alignment:
173 tagaacaaaatcatctcagacctaataaattgaaacttagctattgatggctaatgcacaaataacta--ttaaaagaaaacaacattacatgaatttgg 270  Q
    ||||||| || ||||| ||||||||| |||||||  | ||||| | ||||||||| ||||||||||||  |||||||||||||||||||||| |||||||    
23258655 tagaacataaacatctgagacctaatcaattgaagttaagctactcatggctaatccacaaataactagattaaaagaaaacaacattacataaatttgg 23258556  T
271 gactcactatgagttggatggcaa 294  Q
    |||  |||||||||| ||||||||    
23258555 gaccgactatgagttagatggcaa 23258532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 3252216 - 3252067
Alignment:
20 cataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatttatg 111  Q
    |||||||| |||  ||||||||||| ||||||| |||||||||| ||||||| |||||||||| || |||||||        |||||||||||||||||     
3252216 cataaatatgtctgagttataagctggtgtcagcagtcatataatctctaagatcaattatattggatcagaatcataaaagcattacgcacaatttata 3252117  T
112 ctgaataaacgagaataacaatcataataattcagagttacatattacat 161  Q
    || ||||| |  |||||||| |||| |||||||||||||||| |||||||    
3252116 cttaataacctggaataacattcatgataattcagagttacagattacat 3252067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 35076806 - 35076731
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
35076806 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 35076731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 35080064 - 35079989
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
35080064 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 35079989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 6277390 - 6277457
Alignment:
29 gtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    |||| ||||| | |||||||||||||||||||||||||||    |||||||||| |||||||||||||    
6277390 gtcagagttacacgctagtgtcagtagtcatataaactcttgaatcaattatattgggtcagaatcat 6277457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 7570237 - 7570088
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatttatgc 112  Q
    |||||||||||  ||||||||||| ||||||  |||| ||||| ||||||| |||||||||| ||||||||||        |||||| || ||||||| |    
7570237 ataaataggtctgagttataagctggtgtcaacagtcctataatctctaagatcaattatattgggtcagaatcataaaagcattacacataatttatac 7570138  T
113 tgaataaacgagaataacaatcataataattcagagttacatattacatg 162  Q
    ||||||||    ||||||| ||||||||||| ||||||||||||||||||    
7570137 tgaataaaatgaaataacattcataataatttagagttacatattacatg 7570088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 7576652 - 7576503
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatttatgc 112  Q
    |||||||||||  ||||||||||| ||||||  |||| ||||| ||||||| |||||||||| ||||||||||        |||||| || ||||||| |    
7576652 ataaataggtctgagttataagctggtgtcaacagtcctataatctctaagatcaattatattgggtcagaatcataaaagcattacacataatttatac 7576553  T
113 tgaataaacgagaataacaatcataataattcagagttacatattacatg 162  Q
    ||||||||    ||||||| ||||||||||| ||||||||||||||||||    
7576552 tgaataaaatgaaataacattcataataatttagagttacatattacatg 7576503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 1633909 - 1633984
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
1633909 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 1633984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 1637154 - 1637229
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
1637154 ataaatatgtcagagttaaacgctagtgtcagtagtcatatatactctaaaatcaattatattgggtcagaatcat 1637229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 18970818 - 18970960
Alignment:
29 gtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaat--------cattacgcacaatttatgctgaataaa 120  Q
    |||| ||||||||||| |||| || ||||||| || ||||||  |||||||||| ||||||||||        |||||| ||||||||||  ||||||||    
18970818 gtcagagttataagctggtgttagcagtcatacaatctctaatatcaattatattgggtcagaatcataaaagcattacacacaatttatattgaataaa 18970917  T
121 cgagaataacaatcataataattcagagttacatattacatgg 163  Q
    | ||||||||  ||||||| |||||||| |||| |||||||||    
18970918 ctagaataactttcataatgattcagagctacagattacatgg 18970960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 44673249 - 44673324
Alignment:
21 ataaataggtcaaagttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    ||||||| |||| ||||| | ||||||||| ||||||||||| |||||||  |||||||||| |||||||||||||    
44673249 ataaatatgtcagagttaaacgctagtgtcggtagtcatatatactctaaaatcaattatattgggtcagaatcat 44673324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 18974057 - 18974126
Alignment:
94 cattacgcacaatttatgctgaataaacgagaataacaatcataataattcagagttacatattacatgg 163  Q
    |||||||||||||||||  | ||||||| || |||||  |||||||||||||||| |||| |||||||||    
18974057 cattacgcacaatttatattaaataaactaggataactttcataataattcagagctacagattacatgg 18974126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 11184297 - 11184430
Alignment:
34 agttataagctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat--------tacgcacaatttatgctgaataaacgaga 125  Q
    ||||||||||| ||||||| |||| ||||| ||||||  |||||||||| | |||||||||||        ||| |||||||||| | |||||||| |||    
11184297 agttataagctggtgtcagcagtcctataatctctaatatcaattatattgagtcagaatcataaaagcattacacacaatttataccgaataaactaga 11184396  T
126 ataacaatcataataattcagagttacatattac 159  Q
    |||||  |||||||||||||||| |||| |||||    
11184397 ataactttcataataattcagagctacagattac 11184430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 27315750 - 27315696
Alignment:
42 gctagtgtcagtagtcatataaactctaagctcaattatatcgggtcagaatcat 96  Q
    |||||| ||||||||||||||||||||    |||||||||| |||||||||||||    
27315750 gctagtttcagtagtcatataaactcttgaatcaattatattgggtcagaatcat 27315696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University