View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_low_24 (Length: 267)

Name: NF10153_low_24
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_low_24
NF10153_low_24
[»] chr8 (10 HSPs)
chr8 (13-246)||(16629585-16629818)
chr8 (13-246)||(16638466-16638699)
chr8 (13-232)||(16629277-16629511)
chr8 (13-232)||(16638158-16638392)
chr8 (13-215)||(16617261-16617463)
chr8 (13-232)||(16628968-16629203)
chr8 (13-232)||(16637849-16638084)
chr8 (43-167)||(16792925-16793049)
chr8 (12-147)||(16790982-16791117)
chr8 (13-68)||(3574158-3574213)
[»] chr4 (1 HSPs)
chr4 (40-167)||(38877765-38877892)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 16629585 - 16629818
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16629585 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16629684  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16629685 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 16629784  T
Q  213 cacgcagtgattgaggtgaaatagttgtcatctg 246  Q
    ||| ||||| ||||||||||||||||||||||||    
T  16629785 cacccagtgcttgaggtgaaatagttgtcatctg 16629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 16638466 - 16638699
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16638466 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16638565  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16638566 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 16638665  T
Q  213 cacgcagtgattgaggtgaaatagttgtcatctg 246  Q
    ||||| ||| |||||||||||||| |||||||||    
T  16638666 cacgccgtgcttgaggtgaaatagatgtcatctg 16638699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16629277 - 16629511
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  16629277 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatg 16629376  T
Q  113 tagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttcta 197  Q
    ||||| |||||||| ||| |||||||||||||||               ||||||||||||||| | |||||||||| |||| ||||||||||| |||||    
T  16629377 tagttcaaacacttaagtagcgagactccaccttccgagaccccaccaacgggactaataaagggttgtatttcatcattcaaacgaacaacctcttcta 16629476  T
Q  198 tatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    |||| |||| |||||||||||||| || |||||||    
T  16629477 tatcgccgaatgctgcacgcagtgcttcaggtgaa 16629511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16638158 - 16638392
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  16638158 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaatatcaaatg 16638257  T
Q  113 tagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttcta 197  Q
    ||||| |||||||| ||| |||||||||||||||               ||||||||||||||| | |||||||||| |||| ||||||||||| |||||    
T  16638258 tagttcaaacacttaagtagcgagactccaccttccgagaccccaccaacgggactaataaagggttgtatttcatcattcaaacgaacaacctcttcta 16638357  T
Q  198 tatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    |||| |||| |||||||||||||| || |||||||    
T  16638358 tatcgccgaatgctgcacgcagtgcttcaggtgaa 16638392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 16617261 - 16617463
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatg 112  Q
    |||||||||||| | |||||  | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  16617261 caaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaatatcaaatg 16617360  T
Q  113 tagttaaaacactttagtggcgagactccaccttcgggactaataaaggttggtatttcatcgttcatacgaacaaccttttctatatctccgactgctg 212  Q
    || || |||||||| ||||| ||||| |||||||| |||||| |||||||||||||||| || |||| ||| ||||||||||| || || || |||||||    
T  16617361 taattgaaacacttcagtggtgagaccccaccttccggactagtaaaggttggtatttcgtcattcaaacggacaaccttttcaatgtcaccaactgctg 16617460  T
Q  213 cac 215  Q
    |||    
T  16617461 cac 16617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16628968 - 16629203
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatc-tagctgatgaaaatgcatcaatatcaaat 111  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  16628968 caaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaat 16629067  T
Q  112 gtagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttct 196  Q
    |||||| ||||||||||| |  |||||||||||||               ||||||||||||||| | | |||||||| |||| ||||||||||| ||||    
T  16629068 gtagttcaaacactttagcgaagagactccaccttccgggactccaccaacgggactaataaagggttgcatttcatcattcaaacgaacaacctcttct 16629167  T
Q  197 atatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    ||||| |||| |||||||||||||| || |||||||    
T  16629168 atatcaccgaatgctgcacgcagtgcttcaggtgaa 16629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 16637849 - 16638084
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatc-tagctgatgaaaatgcatcaatatcaaat 111  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  16637849 caaagggggttgcatcaaagacgcgacgcattttccatcctgtgggaacaaatcatttcaagtcataatcttagttgatgaaaatgaatcaatatcaaat 16637948  T
Q  112 gtagttaaaacactttagtggcgagactccacctt---------------cgggactaataaaggttggtatttcatcgttcatacgaacaaccttttct 196  Q
    |||||| ||||||||||| |  |||||||||||||               ||||||||||||||| | | |||||||| |||| ||||||||||| ||||    
T  16637949 gtagttcaaacactttagcgaagagactccaccttccgggactccaccaacgggactaataaagggttgcatttcatcattcaaacgaacaacctcttct 16638048  T
Q  197 atatctccgactgctgcacgcagtgattgaggtgaa 232  Q
    ||||| |||| |||||||||||||| || |||||||    
T  16638049 atatcaccgaatgctgcacgcagtgcttcaggtgaa 16638084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 16792925 - 16793049
Alignment:
Q  43 ttttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatgtagttaaaacactttagtggcgagactcca 142  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||||||||  |||||| || ||| ||||||||||| ||||| |     
T  16792925 ttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatttaaatactttagtggcaagacttcg 16793024  T
Q  143 ccttcgggactaataaaggttggta 167  Q
    |||||| ||  ||||||||| ||||    
T  16793025 ccttcgagaacaataaaggtcggta 16793049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 16790982 - 16791117
Alignment:
Q  12 gcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaat 111  Q
    ||||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| |||||||||||||||||  ||||    
T  16790982 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaat 16791081  T
Q  112 gtagttaaaacactttagtggcgagactccaccttc 147  Q
    ||| || ||| ||||||||||| ||||| |||||||    
T  16791082 gtaatttaaatactttagtggcaagacttcaccttc 16791117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 3574158 - 3574213
Alignment:
Q  13 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcat 68  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3574158 caaaggtggttggatcaaagacgcgacacattttccatcctgtgggaacaaatcat 3574213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 38877765 - 38877892
Alignment:
Q  40 gcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatgtagttaaaacactttagtggcgagact 139  Q
    ||||||||||| ||||||||  |||||||| ||||||| ||||| ||||||||| |||||||||| |||||||||  | ||||||||||||| |  | |     
T  38877765 gcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaaattaaacactttagtgacaggtcc 38877864  T
Q  140 ccaccttcgggactaataaaggttggta 167  Q
     ||||||||||| || ||||||||||||    
T  38877865 acaccttcgggaatagtaaaggttggta 38877892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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