View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_27 (Length: 250)
Name: NF10153_low_27
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 53088833 - 53088595
Alignment:
| Q |
1 |
attggttgagtcaaaactcaggtttggtgaaccggcggatcaatgcatggaccaggctaataaatattttttaaacataaactagaaactgctgctagaa |
100 |
Q |
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| T |
53088833 |
attggttgagtcaaaactcaggtttggtgaaccggcggatcaatacatggaccaggctaataaatattttttaaacataaactagaaactgctgctagca |
53088734 |
T |
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| Q |
101 |
gaatccaattgggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttggtcgaataaaataaacatggaaaatcaaaatcacttatgag |
200 |
Q |
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| T |
53088733 |
gaatccaactgggg-agaaggagatcgtagatgtaccccttaacaatacaaatgttttgatcgaataaaataaacatggaaaatcaaaatcacttatgag |
53088635 |
T |
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| Q |
201 |
ttaaaatcatttccattttatattctctaatttctctctg |
240 |
Q |
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| T |
53088634 |
ttgaaatcatttccattttatattctctaatttctctctg |
53088595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 14333483 - 14333333
Alignment:
| Q |
86 |
aaactgctgctagaagaatccaattgggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttggtcgaataaaataaacatggaaaatc |
185 |
Q |
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| T |
14333483 |
aaactgctgctagaagaatcgaac----ggagaacgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacat-gaaaatc |
14333389 |
T |
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| Q |
186 |
aaaatcacttatgagttaaaatcatttccatt-ttatattctctaatttctctctg |
240 |
Q |
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| T |
14333388 |
aaaatcacttgtgagttaaaatcatatccattctctttttctctaatttctctctg |
14333333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14333544 - 14333484
Alignment:
| Q |
1 |
attggttgagtcaaaactcaggtttggtgaacc-ggcggatcaatgcatggaccaggctaa |
60 |
Q |
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|||||||||| | || ||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
14333544 |
attggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaa |
14333484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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