View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_3 (Length: 606)
Name: NF10153_low_3
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 191 - 592
Target Start/End: Original strand, 29284955 - 29285356
Alignment:
| Q |
191 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29284955 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
29285054 |
T |
|
| Q |
291 |
agtcgcttaaaatgttgtgcactctttaggctaacaggtaaataaactacagaaagaaaagaaaatgtaattagtaagagctacaaactttatagtaagc |
390 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285055 |
agtcgcttaaaatattgtgcactctttaggctaacaggtaaataaactacagaaagaaaagaaaatgtaattagtaagagctacaaactttatagtaagc |
29285154 |
T |
|
| Q |
391 |
acttatgcagaaataaacagtaatagaatctcacagaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaatattcctgtcattggag |
490 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285155 |
acttatgcagaaataaacagtaataggatctcacagaaaatggcgatggagtttttagtttttacaagggggtaatttgaaaatattcctgtcattggag |
29285254 |
T |
|
| Q |
491 |
atgttgaacttacataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatatacagacacttattttatggttggtc |
590 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285255 |
atgttgaacttatataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatatacagacacttattttatggttggtc |
29285354 |
T |
|
| Q |
591 |
gt |
592 |
Q |
| |
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|| |
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|
| T |
29285355 |
gt |
29285356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 191 - 590
Target Start/End: Original strand, 35232852 - 35233259
Alignment:
| Q |
191 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
290 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35232852 |
atgcaaagaaagcagctggtgtgaagagaagcaagcctattattacttcctatccatgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
35232951 |
T |
|
| Q |
291 |
-agtcgcttaaaatgttgtgcactctttaggctaacaggtaaataaactaca------gaaagaaaagaaaatgtaattagtaagagctacaaactttat |
383 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35232952 |
cagtcgcttaaaatattgtgcactctttaggctaacaggtaaataaacaacataaaagaaaagaaaagaaaatgtaattagtaagagctacaaactttag |
35233051 |
T |
|
| Q |
384 |
agtaagcacttatgcagaaataaacagtaatagaatctcacag-aaaatggcgatggagtttttagtttttacaagggggtaatttgaaaatattcctgt |
482 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35233052 |
agtaagaacttatgcagaaataaacagtaatagaatctcgcagaaaaatggcgatgaaattttttgtttttacaagggggtaatttgaaaatattcctgt |
35233151 |
T |
|
| Q |
483 |
cattggagatgttgaacttacataatgcagcactattcataagttttttggtgtttccgttttccctcacaacatttcaatatacagacacttattttat |
582 |
Q |
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||||||||||||||||||||||||||||||| | ||||||| ||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
35233152 |
cattggagatgttgaacttacataatgcagcgcgtttcataaatttgttggtgcttccgttttccttcacaacatttcaatataaagacacttattttat |
35233251 |
T |
|
| Q |
583 |
ggttggtc |
590 |
Q |
| |
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|||||||| |
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| T |
35233252 |
ggttggtc |
35233259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 35232473 - 35232665
Alignment:
| Q |
1 |
atcttatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatgaatatga |
100 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
35232473 |
atcttatcttgtaactgatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaataggactgcggtctgatgaatataa |
35232572 |
T |
|
| Q |
101 |
atatacttatatacaacaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaatattaataatggcaatagatcaaaatg |
193 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35232573 |
atgtacttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatg |
35232665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 29283655 - 29283754
Alignment:
| Q |
5 |
tatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatgaatatgaatat |
104 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||||||||| ||||||||||||| || ||||||||| |||||| ||| |||||||||| ||||| |
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| T |
29283655 |
tatcttgtaacagatactaaacatgtagactgtagcacataggagcaagttgtacaactgcttttacaaaa-cggactggggtctgatgaatataaatat |
29283753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35235257 - 35235332
Alignment:
| Q |
1 |
atcttatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
76 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||||||| |||||| |||||||||||| ||| ||||||||||||| |
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| T |
35235257 |
atcttatcttataactgatgctaagcatgtacactgtagcacataagaacaagttgtataactgcatttacaaaat |
35235332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29286869 - 29286933
Alignment:
| Q |
12 |
taactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
76 |
Q |
| |
|
||||| || |||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
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|
| T |
29286869 |
taactgatgctaagcatgtacactgtagcacataggaacaagttctacaactgcatttacaaaat |
29286933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 26000001 - 26000073
Alignment:
| Q |
191 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaac |
263 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |
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|
| T |
26000001 |
atgccaagaaagctactggtgtgaagagtagcaagcccattattacttcatatccacgggcaagtgctcgaac |
26000073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 25999768 - 25999814
Alignment:
| Q |
120 |
cctttgaaatcaaagt-ttttaataatgtgataacatgtgactgaaa |
165 |
Q |
| |
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|||||||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
25999768 |
cctttgaaatcaaactcttttaataatgtgacaacatgtgactgaaa |
25999814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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