View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_30 (Length: 248)
Name: NF10153_low_30
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41717331 - 41717102
Alignment:
| Q |
1 |
ttctagacatagacatccgattacatgtagggagcgtgcagcagtagcagctagacatgcacctacagtagaggtacgacaagagaatgacaatattcat |
100 |
Q |
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| T |
41717331 |
ttctagacatagacatccgattacatgtagggagcgtgcagcagtagcagctagacatccacctatagtagaggtacggcaagagaatgacaatattcat |
41717232 |
T |
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| Q |
101 |
atgtcagaggagatcattgtgacggacaacgtttctgtccctctatcaaatgtgcaggtatgacatcttgaattattggtgttaatttgaataatagctt |
200 |
Q |
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| T |
41717231 |
atgtcagaggagatcattgtgacggacaacgtttctgtccctctatcaaatgtgcaggtatgacatcttgaattattggtgttaatttgaataatagctt |
41717132 |
T |
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| Q |
201 |
agtgaattcaagaactttggatggagttgt |
230 |
Q |
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| T |
41717131 |
agtgaattcaagaactttggatggagttgt |
41717102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 41707409 - 41707292
Alignment:
| Q |
47 |
gcagctagacatgcacctacagtagaggtacgacaagagaatgacaatattcatatgtcagaggagatcattgtgacggacaacgtttctgtccctctat |
146 |
Q |
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| T |
41707409 |
gcagctagacatgtacctatagtagaggaacgacgagagaatgacaatattcatatgtcagaggaggtcattgtgacggacaatgttgttgtccctctat |
41707310 |
T |
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| Q |
147 |
caaatgtgcaggtatgac |
164 |
Q |
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| T |
41707309 |
catatgtgcaggtatgac |
41707292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 41658233 - 41658117
Alignment:
| Q |
47 |
gcagctagacatgcacctacagtagaggtacgacaagagaatgacaatattcatatgtcagaggagatcattgtgacggacaacgtttctgtccctctat |
146 |
Q |
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| T |
41658233 |
gcagctaggcatgcacctatagtagatgaacgacaagagaatgacaacgttcatatctcacaggaggtcattgtgacagacaatgttgttatccctccat |
41658134 |
T |
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| Q |
147 |
caaatgtgcaggtatga |
163 |
Q |
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| T |
41658133 |
cagacgtgcaggtatga |
41658117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 41667315 - 41667240
Alignment:
| Q |
47 |
gcagctagacatgcacctacagtagaggtacgacaagagaatgacaatattcatatgtcagaggagatcattgtga |
122 |
Q |
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| T |
41667315 |
gcagctagacatgcacctatagtagatgaacggcaagagattgagaacgttcatatctcagaggaggtcattgtga |
41667240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 41707280 - 41707218
Alignment:
| Q |
163 |
acatcttgaattattggtgttaatttgaataatagcttagtgaattcaagaactttggatgga |
225 |
Q |
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| T |
41707280 |
acatcttgaattatggttgttaatttgaatatttgcttggtgaattgaagaattttagatgga |
41707218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 2439464 - 2439578
Alignment:
| Q |
51 |
ctagacatgcacctacagtagaggtacgacaagagaatgacaatattcatatgtcagaggagatcattgtgacggacaacgtttctgtccctctatcaaa |
150 |
Q |
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| T |
2439464 |
ctagacatgcacctatagtagatgaacgacaagagaatgacaacgttcatatgtcagaggaggtcattgttatggacagtgttgttgcccctccatcaga |
2439563 |
T |
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| Q |
151 |
tgtgcaggtatgaca |
165 |
Q |
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| T |
2439564 |
cttgcaggtatgaca |
2439578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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