View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10153_low_31 (Length: 247)
Name: NF10153_low_31
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_31 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30045619 - 30045381
Alignment:
| Q |
1 |
caataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30045619 |
caataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccagg |
30045520 |
T |
|
| Q |
101 |
tccaccagcactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtcc |
200 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30045519 |
tccaccaacactaccaataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtcc |
30045420 |
T |
|
| Q |
201 |
ttacaacttggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30045419 |
ttacaacttggtcaagtcccagctattgtcatttcatct |
30045381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 30071441 - 30071211
Alignment:
| Q |
9 |
tttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtccaccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | | |||| |||||||||||||||||||| |
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|
| T |
30071441 |
tttgcttttcttctcttcactttcatgtactttctattcaaactctacttacatccaaaacaaaaaaccctaaaccataaaaaaccaccaggtccaccat |
30071342 |
T |
|
| Q |
109 |
cactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaact |
208 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30071341 |
cactaccaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaact |
30071242 |
T |
|
| Q |
209 |
tggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |
|
|
| T |
30071241 |
tggtcaagttccaactattatcatttcatct |
30071211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 30005543 - 30005773
Alignment:
| Q |
9 |
tttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtccaccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | | |||| ||||||||||||||||| || |
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|
| T |
30005543 |
tttgcttttcttctcttcactttcatgtactttctattcaaactctacttacatccaaaacaaaaaaccctaaaccataaaaaaccaccaggtccatcaa |
30005642 |
T |
|
| Q |
109 |
cactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaact |
208 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30005643 |
cactaccaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaact |
30005742 |
T |
|
| Q |
209 |
tggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |
|
|
| T |
30005743 |
tggtcaagttccaactattatcatttcatct |
30005773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 29990397 - 29990631
Alignment:
| Q |
5 |
aatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtcca |
104 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
29990397 |
aatatttgctttccttctcttcactttcacatactttctattcaaactattcttgcattcaaaacaaaaaaccattatccataaaaaaccaccatgtcca |
29990496 |
T |
|
| Q |
105 |
ccagcactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttac |
204 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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|
| T |
29990497 |
ccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttac |
29990596 |
T |
|
| Q |
205 |
aacttggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
29990597 |
aacttggacaagttccaacaattgtcatttcatct |
29990631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 29999114 - 29999335
Alignment:
| Q |
18 |
cttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtccaccagcactaccaa |
117 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||||||| |||||||||| ||||||| |||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
29999114 |
cttctcttcactttcatataccttttattcaaactcttcttacatccaaaacaaaataccattaaccataaaaagccaccaggtccaccaacactaccaa |
29999213 |
T |
|
| Q |
118 |
taataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
217 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999214 |
taataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttacaacttggtcaagt |
29999313 |
T |
|
| Q |
218 |
tccagctattgtcatttcatct |
239 |
Q |
| |
|
|||| | ||||| ||||||||| |
|
|
| T |
29999314 |
tccaacaattgttatttcatct |
29999335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 29943571 - 29943800
Alignment:
| Q |
10 |
ttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtccaccagc |
109 |
Q |
| |
|
||||||| ||| |||||||||||| || ||| ||| |||||| ||||| ||| |||||||||||||||| | ||| |||| ||||||||||||||| | |
|
|
| T |
29943571 |
ttgctttccttatcttcactttcacatattttttatccaaactattcttgcatccaaaacaaaaaaccatcaatcataaaaagccaccaggtccaccatc |
29943670 |
T |
|
| Q |
110 |
actaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaactt |
209 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29943671 |
actaccaataatcggaaacctccacatattaggcacccttccacatagaacacttcaatcactctccaaacaatatggtccaatcatgtccttacaacta |
29943770 |
T |
|
| Q |
210 |
ggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
29943771 |
ggtcaagtcccagctattgtcatttcatct |
29943800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 29949247 - 29949450
Alignment:
| Q |
18 |
cttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccaggtccaccagcactaccaa |
117 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||||||||| |||||||||||| ||| | |||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
29949247 |
cttctcttcactttcacatgctttttattcaaacacttcttacatccaaaacaaaaaaacataaaccataaaaagccaccaggtccaccaacactaccaa |
29949346 |
T |
|
| Q |
118 |
taataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
217 |
Q |
| |
|
|||| |||||||| ||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29949347 |
taattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaagt |
29949446 |
T |
|
| Q |
218 |
tcca |
221 |
Q |
| |
|
|||| |
|
|
| T |
29949447 |
tcca |
29949450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29962788 - 29963026
Alignment:
| Q |
1 |
caataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccagg |
100 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| ||| || |||||||| ||| ||||| | ||||||||| ||||| | ||| ||||||||||||| |
|
|
| T |
29962788 |
caataataattcctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaaccaccagg |
29962887 |
T |
|
| Q |
101 |
tccaccagcactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
29962888 |
tccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtcc |
29962987 |
T |
|
| Q |
201 |
ttacaacttggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
29962988 |
ttacaacttggtcaagttccaacaattgttatttcatct |
29963026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30012010 - 30011772
Alignment:
| Q |
1 |
caataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaaaaccattatccatgaaaaaccaccagg |
100 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| ||| || |||||||| ||| ||||| | ||||||||| ||||| | ||| ||||||||||||| |
|
|
| T |
30012010 |
caataataattcctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaaccaccagg |
30011911 |
T |
|
| Q |
101 |
tccaccagcactaccaataataggaaacctacacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
30011910 |
tccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtcc |
30011811 |
T |
|
| Q |
201 |
ttacaacttggtcaagttccagctattgtcatttcatct |
239 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
30011810 |
ttacaacttggtcaagttccaacaattgttatttcatct |
30011772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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