View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_34 (Length: 242)
Name: NF10153_low_34
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 41530888 - 41530800
Alignment:
| Q |
18 |
atattcctatgatataagttaaggggcgaaaaagaaattaacaaataaattgtgtattaaaaatatacgtatttaaatttttaagtttc |
106 |
Q |
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| T |
41530888 |
atattcctgtgatataagttaaggggcgaaaaagaaattaacaaataaattgtgtattgaaaatatacgtatttaaatttttaagtttc |
41530800 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 41530724 - 41530664
Alignment:
| Q |
188 |
cttgttctcttaaatgtacttcatct------gatcctaaatataagtaaaaataaaattt |
242 |
Q |
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| T |
41530724 |
cttgttctcttaaatgtacttcatcttcatctgatcctaaatataagtaaaaataaaattt |
41530664 |
T |
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