View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10153_low_36 (Length: 240)
Name: NF10153_low_36
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_36 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42313347 - 42313116
Alignment:
| Q |
1 |
cgtcactctccacctctcaatttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgtta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
42313347 |
cgtcactctccacctctcaatttatcaaaatagagcaattgggttttcaggttttacagttttgaaccagttggtaaattggctcgattggtggttgtta |
42313248 |
T |
|
| Q |
100 |
atttatttattttttggaaaagttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
42313247 |
atttatttattttttggaaaagttttagctttggttaaaaattgttgaagaactaaacatgattgtgagtttctgtgttatataatttctgatataagat |
42313148 |
T |
|
| Q |
200 |
gatgtatttttatgtctatttgttcatgatgt |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
42313147 |
gatgtatttttgtgtctatttgttcatgatgt |
42313116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 20910210 - 20909999
Alignment:
| Q |
22 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20910210 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
20910111 |
T |
|
| Q |
121 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgta-tttttatgtctatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||| |
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|
| T |
20910110 |
gttttagctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatt |
20910011 |
T |
|
| Q |
220 |
tgttcatgatgt |
231 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20910010 |
tgttcatgatgt |
20909999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 20924658 - 20924447
Alignment:
| Q |
22 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20924658 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
20924559 |
T |
|
| Q |
121 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgta-tttttatgtctatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||| |
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|
| T |
20924558 |
gttttagctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatt |
20924459 |
T |
|
| Q |
220 |
tgttcatgatgt |
231 |
Q |
| |
|
|||||||||||| |
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|
| T |
20924458 |
tgttcatgatgt |
20924447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 41327102 - 41326892
Alignment:
| Q |
22 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
41327102 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
41327003 |
T |
|
| Q |
121 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtatttttatgtctattt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||| ||||||||| |
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|
| T |
41327002 |
gttttagctttggttaaaaattgttgaagaactaaacatggttgtgagtttctgtgttatataatttccgatatgagatgatgtatttttgtgtctattt |
41326903 |
T |
|
| Q |
221 |
gttcatgatgt |
231 |
Q |
| |
|
||||| |||| |
|
|
| T |
41326902 |
cttcatcatgt |
41326892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 53689708 - 53689890
Alignment:
| Q |
25 |
tcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagtt |
123 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
53689708 |
tcaaaatagagcaattgggttttcaagttctacagttttgaaccaattggtaaatttgctagattggtggttgttaattc-----ttttttggaaaagtt |
53689802 |
T |
|
| Q |
124 |
tt-agctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtattttt |
210 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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|
| T |
53689803 |
tttagctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctgacatgagatgatgtattttt |
53689890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 52311190 - 52310987
Alignment:
| Q |
25 |
tcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagtt |
123 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||| || |
|
|
| T |
52311190 |
tcaaaatagagcaattgggttttcaagttctgcagttttgaaccaattggtaaatttgctagattggtggttgttaattc-----ttttttagaattttt |
52311096 |
T |
|
| Q |
124 |
tt-agctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtat-ttttatgtctatttg |
221 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||||||||| |||| ||||||||||| |||| | |||||| | |
|
|
| T |
52311095 |
tttagctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctaacatgagatgatgtattttttgtatctattag |
52310996 |
T |
|
| Q |
222 |
ttcatgatg |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
52310995 |
ttcatgatg |
52310987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 18940265 - 18940083
Alignment:
| Q |
24 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagt |
122 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||| |||| |||| |||||| ||||||||||| || ||| |||||| |
|
|
| T |
18940265 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
18940175 |
T |
|
| Q |
123 |
ttta-gctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtatttttatg |
213 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||| ||| |||| || |||||||||| |
|
|
| T |
18940174 |
tttaagctttgattaaaaatagttgaagaattaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatg |
18940083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 7828646 - 7828467
Alignment:
| Q |
24 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagt |
122 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||| |||| |||| ||||| |||||||||| || ||| ||||||| |
|
|
| T |
7828646 |
atcaaaatagagcaattgggttttcaagtactgcagttttgaaccaatc----aatttgctcgattgggcattgttaattt-----ttgttttgaaaagt |
7828556 |
T |
|
| Q |
123 |
-tttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtattttt |
210 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||| || ||||||||||| |
|
|
| T |
7828555 |
ctttagctttggttaaaaatagttgaagaactaaacggggctgtgagtttctgttttatataatttctagcatgggaagatgtattttt |
7828467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 42479 - 42412
Alignment:
| Q |
122 |
ttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttct |
189 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||| ||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
42479 |
ttttagctttagttcaaaatagttgaagaacttaacggggttgtgagtttttgttttatataatttct |
42412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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