View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_4 (Length: 579)
Name: NF10153_low_4
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 44199207 - 44199658
Alignment:
| Q |
18 |
gaaccatggcatcccaataagcctccttgatgaaattcaatggcttggacaaactctcttcacccttccctctcaccaaaaactcaaagccattcgttcc |
117 |
Q |
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| T |
44199207 |
gaaccatggcatcccaataagcctccttgatgaaattcaatggcttggacaaactctcttcacccttccctctcaccaaaaactcaaagccattcgttcc |
44199306 |
T |
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| Q |
118 |
ccagatggtgtttcgggctatggcctcgctcgcatatcctccttcttccccaaactcatgtggtccgagggatttaccatcgttggatcccctcttgatc |
217 |
Q |
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| T |
44199307 |
ccagatggtgtttcgggctatggcctcgctcgcatatcctccttcttccccaaactcatgtggtctgagggatttaccatcgttggatcccctcttgatc |
44199406 |
T |
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| Q |
218 |
attttcaacaactttggcctcaagattatgccaaacactggtgagcgccattaagagtcttacattagatataatatactttgaaaaatacttttcaagt |
317 |
Q |
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| T |
44199407 |
attttcaacaactttggcctcaagattatgccaaacactggtgagtgccattaagagtcttacattagatataatatactttgaaaaatacttttcaagt |
44199506 |
T |
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| Q |
318 |
aaaatattatttttcaacttatactcgtgtgatatcaagtattaggtctaacttaagttttaagatattccaaccatcttcttgatgtgtgtgtgatgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
44199507 |
aaaatattatttttcaacttatactcgtgtgatatcaaatattaggtctaacttaagttttaagatattccaaccatctttttgatttgtgtgtgatgtg |
44199606 |
T |
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| Q |
418 |
tcctcaattcacatccaatgctacaaaaacaataattaagctaactaactac |
469 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199607 |
tcctcaattctcatccaatgctacaaaaacaataattaagctaactaactac |
44199658 |
T |
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