View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10153_low_40 (Length: 204)
Name: NF10153_low_40
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10153_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 11368222 - 11368368
Alignment:
| Q |
1 |
aacattgataagttgataatatgctacttggcctctaattctttcaacttttatcttgcagagcctattctctatggtccttttctttttcttccaaaag |
100 |
Q |
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| T |
11368222 |
aacattgataagttgataatatgctacttggcctctaattctttcaacttttatcttgcagagcctattctctatggtccttttctttttcttccaaaag |
11368321 |
T |
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| Q |
101 |
atactcaggagctatttttatgctgtgtggagtatttttcttggtta |
147 |
Q |
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| T |
11368322 |
atactcaggagctatttttatgctgtgtggagtatttttcttggtta |
11368368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 11368189 - 11368221
Alignment:
| Q |
151 |
agaaggaggtaaacataaacctgagcatgcttt |
183 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11368189 |
agaaggaggtaaacataaacctgagcatgcttt |
11368221 |
T |
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