View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_low_6 (Length: 504)

Name: NF10153_low_6
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_low_6
NF10153_low_6
[»] chr2 (1 HSPs)
chr2 (9-298)||(17196414-17196703)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 17196703 - 17196414
Alignment:
Q  9 agcacagagcgtgagaaatggagacaccaccctcaaccggcgccgtgaagaagaaggagacaagaggacgcaaacctaaacccaaggaagacaagagaga 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17196703 agcacagagagtgagaaatggagacaccaccctcaaccggcgccgtgaagaagaaggagacaagaggacgcaaacctaaacccaaggaagacaagagaga 17196604  T
Q  109 agaaccatcacaagtgaagacaccgagagaatcgaagaaggaaaagcaacagcaacagcttcatcagcagcagcaacaacaagcttctgttgatgagaag 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17196603 agaaccatcacaagtgaagtcaccgagagaatcgaagaaggaaaagcaacagcaacagcttcatcagcagcagcaacaacaagcttctgttgatgagaag 17196504  T
Q  209 tactctcaatggaaatctcttgttcctgttctttatgattggctcgctaatcataacctcgtttggccttctctctcttgccggttaggg 298  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17196503 tactctcaatggaaatctcttgttcctgttctttatgattggcttgctaatcataacctcgtttggccttctctctcttgccggttaggg 17196414  T

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