View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10153_low_8 (Length: 478)

Name: NF10153_low_8
Description: NF10153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10153_low_8
NF10153_low_8
[»] chr7 (3 HSPs)
chr7 (19-462)||(697592-698030)
chr7 (164-240)||(25066569-25066646)
chr7 (167-203)||(12846644-12846680)
[»] chr8 (2 HSPs)
chr8 (164-240)||(44953023-44953099)
chr8 (161-218)||(7970063-7970120)
[»] chr5 (2 HSPs)
chr5 (267-307)||(9358508-9358548)
chr5 (167-203)||(33281635-33281671)
[»] chr4 (2 HSPs)
chr4 (164-246)||(7817773-7817856)
chr4 (159-203)||(43457464-43457508)
[»] chr3 (4 HSPs)
chr3 (165-246)||(23482671-23482753)
chr3 (164-231)||(50508404-50508472)
chr3 (167-240)||(7681023-7681097)
chr3 (167-203)||(33711952-33711988)
[»] scaffold0896 (1 HSPs)
scaffold0896 (164-240)||(3757-3834)
[»] chr6 (2 HSPs)
chr6 (164-240)||(7080972-7081049)
chr6 (164-240)||(8811310-8811387)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 697592 - 698030
Alignment:
Q  19 aattggcaggcttattagtgagagagagtgttggtatatatcaaatgaagagatttcgagacatgtgtattgttggattgatgaagtgaaagagaaaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697592 aattggcaggcttattagtgagagagagtgttggtatatatcaaatgaagagatttcgagacatgtgtattgttggattgatgaagtgaaagagaaaatt 697691  T
Q  119 atgtctgaaaatatagaaatgacgttcttatttgagagtattttcgaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697692 atgtctgaaaatatagaaatgacgttcttatttgagagtatttttgaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat 697791  T
Q  219 atccttaaataaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctgaagcattgctttgatccaatggctgcagtcaaaataataa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697792 atccttaaataaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctgaagcattgctttgatccaatggctgcagtcaaaataataa 697891  T
Q  319 cacagtcacaaaaaccagtaagtaaatataagtaatttgactgtttaattccttgcaccccacgttccttggtcagcacggttccttgttattacaataa 418  Q
    ||||||||||| | |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697892 cacagtcacaacacc-----agtaaatataagtaatttgactgtttaattccttgcaccccacgttccttggtcagcacggttccttgttattacaataa 697986  T
Q  419 tatataaacttcttctcacttctacttagaatcctagtcccccc 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  697987 tatataaacttcttctcacttctacttagaatcctagtcccccc 698030  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 25066646 - 25066569
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 240  Q
    ||||||||||| ||||||||||| || |||| |||||||| ||||| || |||| ||||||| | |||||||||||||    
T  25066646 gaatttttctagttacaccctatttaattcttgttacaccctaaaatgacaaaattatcctttagtaaaatttaattt 25066569  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 12846644 - 12846680
Alignment:
Q  167 tttttctaattacaccctatgtatttctggttacacc 203  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  12846644 tttttctatttacaccctatatatttctggttacacc 12846680  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 44953023 - 44953099
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaatatccttaaataaaatttaattt 240  Q
    ||||||||||||| ||||||||||||||  |||||||||| ||||| || ||| |||| |||||| |||||||||||    
T  44953023 gaatttttctaatcacaccctatgtattcatggttacaccttaaaatgataaattatctttaaatgaaatttaattt 44953099  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 7970120 - 7970063
Alignment:
Q  161 ttcgaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat 218  Q
    ||||| |||||||||||||||||| | |||||||| ||||||| ||||| || |||||    
T  7970120 ttcgactttttctaattacaccctttatatttctgattacaccctaaaatgacaaaat 7970063  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 9358548 - 9358508
Alignment:
Q  267 aaagtgaatctgaagcattgctttgatccaatggctgcagt 307  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9358548 aaagtgaatctgaagcattgctttgatccaatggctgcagt 9358508  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 33281671 - 33281635
Alignment:
Q  167 tttttctaattacaccctatgtatttctggttacacc 203  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33281671 tttttctatttacaccctatgtttttctggttacacc 33281635  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 7817773 - 7817856
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat-atccttaaataaaatttaatttaatctt 246  Q
    ||||||||||||||||||  || ||||| ||  ||||||  ||||| || ||||| ||||||||||||||||||||||||||||    
T  7817773 gaatttttctaattacacaatacgtattcctaattacactctaaaatgacaaaattatccttaaataaaatttaatttaatctt 7817856  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 43457464 - 43457508
Alignment:
Q  159 ttttcgaatttttctaattacaccctatgtatttctggttacacc 203  Q
    ||||||| |||||||| | ||||||||| ||||||||||||||||    
T  43457464 ttttcgagtttttctattcacaccctatatatttctggttacacc 43457508  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 23482671 - 23482753
Alignment:
Q  165 aatttttctaattacaccctatgtatttctggttacaccataaaacgaaaaaat-atccttaaataaaatttaatttaatctt 246  Q
    ||||||||||||||||    |||||||  |||||||||  ||||| || ||||| ||||||||||||||||||||||||||||    
T  23482671 aatttttctaattacatttcatgtattcatggttacacactaaaatgataaaattatccttaaataaaatttaatttaatctt 23482753  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 50508472 - 50508404
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaa 231  Q
    |||||||||||||||||||| ||  ||| ||||||||||| ||||| || |||| ||||||||||||||    
T  50508472 gaatttttctaattacaccccatacattcctggttacaccctaaaatgataaaattatccttaaataaa 50508404  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 7681097 - 7681023
Alignment:
Q  167 tttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 240  Q
    |||||||||||||||||||| || |||||||| |||| ||||| || |||| || ||||  ||||||||||||||    
T  7681097 tttttctaattacaccctatttaattctggttgcaccctaaaatgacaaaattacccttccataaaatttaattt 7681023  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 33711952 - 33711988
Alignment:
Q  167 tttttctaattacaccctatgtatttctggttacacc 203  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  33711952 tttttctatttacaccctatgtttttctggttacacc 33711988  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 3834 - 3757
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 240  Q
    ||||||||||||||||||||  | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  3834 gaatttttctaattacaccccgtatattcctggttacaccccaaaatgataaaattatccttacataaaatttgattt 3757  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 7080972 - 7081049
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 240  Q
    |||||||||||||||||| || | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  7080972 gaatttttctaattacacactgtatattcctggttacaccccaaaatgataaaattatccttagataaaatttgattt 7081049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 8811387 - 8811310
Alignment:
Q  164 gaatttttctaattacaccctatgtatttctggttacaccataaaacga-aaaaatatccttaaataaaatttaattt 240  Q
    ||||||||||||||||||||  | |||| |||||||||||  |||| || |||| |||||||| ||||||||| ||||    
T  8811387 gaatttttctaattacaccccgtatattcctggttacaccccaaaatgataaaattatccttacataaaatttgattt 8811310  T

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