View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_high_4 (Length: 303)
Name: NF10154_high_4
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 43008615 - 43008877
Alignment:
| Q |
25 |
ctccctcaatacgctcatatcattattcagttggtaaacaaaattcttaaaataaaatcatcgcaaaagtaacaaacgccgttgttgagacttttgnnnn |
124 |
Q |
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| T |
43008615 |
ctccctcaatacgctcatatcattattcagttggtaaacaaaattcttaaaatcaaatcatcgcaaaagtaacaaacgccgttgttgagacttttg---t |
43008711 |
T |
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| Q |
125 |
nnnnnnnnatacagctttcctctactcgtaacaaaatatcaaaaagaccagacaccaatcattttttnnnnnnnnnnnccatacctttaaattttttacg |
224 |
Q |
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| T |
43008712 |
tttttcttatacagctttcctctactcgtaacaaaatatcaaaaagaccagacaccaatca--ttttaaaaaaaaaaaccataccgttaaattttttacg |
43008809 |
T |
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| Q |
225 |
ttgtttagggttttgtgttcttgagagagatgtgtcctttaaggttcatcttagtgtttttctctgct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43008810 |
ttgtttagggttttgtgttcttgagagagatgtgtcctttaaggttcatcttagtgtttttctctgct |
43008877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 10134894 - 10134824
Alignment:
| Q |
224 |
gttgtttagggttttgtgttctt---gagagagatgtgtcctttaaggttcatcttagtgtttttctctgc |
291 |
Q |
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| T |
10134894 |
gttgtttaaggttttgtgttctttgagagagagatgtgtcctttaaggttcatcttggtgttcttctctgc |
10134824 |
T |
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