View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10154_low_11 (Length: 314)

Name: NF10154_low_11
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10154_low_11
NF10154_low_11
[»] chr6 (13 HSPs)
chr6 (9-275)||(33059871-33060137)
chr6 (9-223)||(33360864-33361080)
chr6 (9-153)||(33412356-33412500)
chr6 (9-152)||(33306925-33307068)
chr6 (9-156)||(33642115-33642262)
chr6 (9-153)||(33265320-33265464)
chr6 (9-153)||(33274464-33274608)
chr6 (9-153)||(33288013-33288157)
chr6 (9-153)||(33403049-33403193)
chr6 (9-150)||(31566622-31566763)
chr6 (33-153)||(33390511-33390631)
chr6 (9-150)||(9169299-9169440)
chr6 (215-275)||(33360386-33360446)
[»] chr2 (1 HSPs)
chr2 (9-153)||(17438187-17438331)
[»] scaffold1749 (1 HSPs)
scaffold1749 (9-153)||(584-728)
[»] scaffold0428 (1 HSPs)
scaffold0428 (9-153)||(9345-9489)
[»] chr4 (3 HSPs)
chr4 (9-145)||(31501624-31501760)
chr4 (9-100)||(31496454-31496545)
chr4 (39-98)||(31162143-31162202)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 33060137 - 33059871
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  33060137 agcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactctatgaaggtgtcaagatggagagaagctctagagcaagt 33060038  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaatttacagnnnnnnnnggtagaaaatataaggtgaatgtgaagagatgatgcatgagtct 208  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||    
T  33060037 ggggagtatatctggttgggatctacgtgatgagtaagtaatttatagttttttttggtagaaaatataaggtgaatgtgaagagatgatgcatgagtct 33059938  T
Q  209 aggatataaattcaaagagtactttttttgttttccctttagaacaaatatttggtgttcaaactaa 275  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33059937 acgatataaattcaaagagtactttttttgttttccctttagaacaaatatttggtgttcaaactaa 33059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 33361080 - 33360864
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33361080 agcaaagtgagatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactctaagaaggtgtcaatatggagggaagctctagagcaagt 33360981  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaatttacag--nnnnnnnnggtagaaaatataaggtgaatgtgaagagatgatgcatgagt 206  Q
     |||  ||| |||||||||||||||| |||| ||||||||| ||| ||          || | |||||||||||||||||||||||||||||||| ||||    
T  33360980 gggggatatctctggttgggatctacatgataagtaagtaacttatagttttttttttggcaaaaaatataaggtgaatgtgaagagatgatgcacgagt 33360881  T
Q  207 ctaggatataaattcaa 223  Q
    |||||||||||||||||    
T  33360880 ctaggatataaattcaa 33360864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 33412500 - 33412356
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||| || | |||||    
T  33412500 agcaaagtgggatttattgtgaatcttttgtcaaacatgaacaaagattccaacaagaccctcataaggtgtcaagatggagggaagctttaaaccaagt 33412401  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     |||||||| ||||||||||||||||||||| ||||||| |||||    
T  33412400 ggggagtatctctggttgggatctacgtgataagtaagttattta 33412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 33307068 - 33306925
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||| | || ||    
T  33307068 agcaaagtgggatttattgtgaagcctttgtcaaacatgaacaaagattccaacaagactttgagatggtgtcaagatggagggaagctctaaaacatgt 33306969  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattt 152  Q
     |||||||| ||||||||||||||||||||| ||||||||||||    
T  33306968 ggggagtatctctggttgggatctacgtgataagtaagtaattt 33306925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 33642115 - 33642262
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| || |||||| | ||| ||||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||| | |||||    
T  33642115 agcaaagtggaatttattgggaagcttttgtcaaacatgaacaaagattccaacaagactttcaaatggtgtcaagatggagggaagctctaaaacaagt 33642214  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaatttacag 156  Q
     |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  33642215 ggggagtatctctggttgggatctacgtgataagtaagtaatttacag 33642262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 33265464 - 33265320
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||| ||||||||||||   | |||||||||||| ||||||||| |||||| | |||||    
T  33265464 agcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtcaaaatggagggacgctctaaaacaagt 33265365  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     |||||||| ||||||||||||||||||||| |||||||||||||    
T  33265364 ggggagtatctctggttgggatctacgtgataagtaagtaattta 33265320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 33274608 - 33274464
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | ||| ||||||||||||||| ||||||||||||   | |||||||||||| ||||||||| |||||| | |||||    
T  33274608 agcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtcaaaatggagggacgctctaaaacaagt 33274509  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     |||||||| ||||||||||||||||||||| |||||||||||||    
T  33274508 ggggagtatctctggttgggatctacgtgataagtaagtaattta 33274464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 33288157 - 33288013
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | |||  || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| | |||||    
T  33288157 agcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatggtgtcaagatggagggaagccctaaaacaagt 33288058  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     ||||||||  |||||||||||||| ||||| |||||||||||||    
T  33288057 ggggagtatcgctggttgggatctatgtgataagtaagtaattta 33288013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 33403193 - 33403049
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| || |||||| ||||| | |||||||| |||||| ||| ||||||||||| || | ||| ||||||||||||||||||||||||| | |||||    
T  33403193 agcaaagtggtatttattgtgaagcctttgtcaagcatgaaaaaagattccaacaaggctttgagatggtgtcaagatggagggaagctctaaaacaagt 33403094  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     |||||||||||||||||||||||| ||||| |||||||||||||    
T  33403093 ggggagtatatctggttgggatctatgtgataagtaagtaattta 33403049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 31566622 - 31566763
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| |||||||||  |||| |||||| |||||||||||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||| | |||||    
T  31566622 agcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagt 31566721  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaat 150  Q
     | |||||| | ||||||||||||||||||| ||||||||||    
T  31566722 ggcgagtatctttggttgggatctacgtgataagtaagtaat 31566763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 33390631 - 33390511
Alignment:
Q  33 cttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagtagggagtatatctggttgggatct 132  Q
    ||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||    
T  33390631 cttttgtcaaacatgaacaaagattccaacaaaactctcagatggtgtcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatct 33390532  T
Q  133 acgtgatgagtaagtaattta 153  Q
    | ||||| |||||| ||||||    
T  33390531 atgtgataagtaagaaattta 33390511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 9169440 - 9169299
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | |||| |||||||||||||| |||| || |||| ||| | | ||||||| |||||||| ||| | || | |||||    
T  9169440 agcaaagtgggatttattgtgaagcatttgccaaacatgaacaaagattcaaataagattctcacatggtgtcaggatggaggaaaggtttaaaacaagt 9169341  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaat 150  Q
     |||||||| ||||||||||| ||||||||| ||||||||||    
T  9169340 ggggagtatctctggttgggacctacgtgataagtaagtaat 9169299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 33360446 - 33360386
Alignment:
Q  215 taaattcaaagagtactttttttgttttccctttagaacaaatatttggtgttcaaactaa 275  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  33360446 taaattcaaagagtatgttttttgttttccctttagaacaaatatttggtgttcaaactaa 33360386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 17438187 - 17438331
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||| |||||||    
T  17438187 agcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaagatggagggaagctctaaagcaagt 17438286  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     ||||||||  |||||||||||||||||||| |||||||||||||    
T  17438287 ggggagtatcgctggttgggatctacgtgataagtaagtaattta 17438331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 728 - 584
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| | ||   ||||| |||||||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| | |||||    
T  728 agcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaagatggagggaagctctaaaccaagt 629  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     ||||||||  |||||||||||||||||||| |||||||||||||    
T  628 ggggagtatcgctggttgggatctacgtgataagtaagtaattta 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 9489 - 9345
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| | ||   ||||| |||||||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| | |||||    
T  9489 agcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaagatggagggaagctctaaaccaagt 9390  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaagtaattta 153  Q
     ||||||||  |||||||||||||||||||| |||||||||||||    
T  9389 ggggagtatcgctggttgggatctacgtgataagtaagtaattta 9345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 31501624 - 31501760
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctctagagcaagt 108  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||||||||| ||| ||||  ||||||||||||||||||    |||||    
T  31501624 agcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattccaacaagactctcagatggtgctaagatggagggaagctctgacacaagt 31501723  T
Q  109 agggagtatatctggttgggatctacgtgatgagtaa 145  Q
     |   || |||||||||| |||||||||||| |||||    
T  31501724 cgccggtctatctggttgcgatctacgtgataagtaa 31501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 31496454 - 31496545
Alignment:
Q  9 agcaaagggggatttatagtgaatcttttgtcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctcta 100  Q
    ||||||| || |||||| ||||| | ||||||||||||||||||| |||||||||||||||| ||| ||||  |||||||||||||||||||    
T  31496454 agcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattccaacaagactctcagatggtgcaaagatggagggaagctcta 31496545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 31162202 - 31162143
Alignment:
Q  39 tcaaacatgaacaaacattccaacaagactctaagaaggtgtcaagatggagggaagctc 98  Q
    ||||||||||||||| |||||||||||||||| ||| ||||  |||||||||||||||||    
T  31162202 tcaaacatgaacaaagattccaacaagactctgagatggtgcaaagatggagggaagctc 31162143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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