View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_13 (Length: 301)
Name: NF10154_low_13
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 12089552 - 12089273
Alignment:
| Q |
1 |
cgcctccacgccacctgctgcaacgcatatgcaacctcgttaaccgaaaaatactgctgcataagcagcacttgattccaattaaccctcctctgctgaa |
100 |
Q |
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| T |
12089552 |
cgcctccacgccacctgctgcaacgcatatgcaacctcgttaaccgaaaaatactgctgcataagcagcacttgattccaattaaccctcctctgctgaa |
12089453 |
T |
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| Q |
101 |
ttgcaccaacaacatgatcatactcaccactctcaccaataacacctaaatgctgacacaaacaatcaataatagcattcgcagcagcgaattcgctacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12089452 |
ttgcaccaacaacatgatcatactcaccactctcaccaataacacctaaatgctgacacaaacaatcaataatagcattcgcagcagcgaattcgctacg |
12089353 |
T |
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| Q |
201 |
aatccaattcataaacccatctctctcatcaacaaaccattgttgttgatgctgttgctgttgctgtggtggtggtctgt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12089352 |
aatccaattcataaacccatctctctcatcaacaaaccattgttgttgatgctgttgctgttgctgtggtggtggtctgt |
12089273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 12106184 - 12105945
Alignment:
| Q |
6 |
ccacgccacctgctgcaacgcatatgcaacctcgttaaccgaaaaatactgctgcataagcagcacttgattccaattaaccctcctctgctgaattgca |
105 |
Q |
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||||||||||||||| |||||||| | ||||| ||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
12106184 |
ccacgccacctgctgtaacgcatactccacctcattaaccgaatagtactgctgcataagaagcacttgattccaattaattctcctctgctgaattgca |
12106085 |
T |
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| Q |
106 |
ccaacaacatgatcatactcaccactctcaccaataacacctaaatgctgacacaaacaatcaataatagcattcgcagcagcgaattcgctacgaatcc |
205 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |||| || |
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| T |
12106084 |
ccaacaacatgatcatactcaccactctcaccagcaacacctaaatgctgacacaaacaatctataatcgcattcgcagctgcaaattcgctgcgaagcc |
12105985 |
T |
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| Q |
206 |
aattcataaacccatctctctcatcaacaaaccattgttg |
245 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
12105984 |
aattcataaacccatctctctcatccacaaaccattgttg |
12105945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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