View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_14 (Length: 272)
Name: NF10154_low_14
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 1695909 - 1695981
Alignment:
| Q |
58 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcat |
130 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcat |
1695981 |
T |
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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 1696050 - 1696104
Alignment:
| Q |
190 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaaca |
244 |
Q |
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| T |
1696050 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaaca |
1696104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 1685404 - 1685447
Alignment:
| Q |
85 |
atcgttgatctaaatatagctggtatactaaggttgattctttc |
128 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 1685520 - 1685553
Alignment:
| Q |
209 |
tatattcacgtaaacaccaaaacaaagtaataaa |
242 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaa |
1685553 |
T |
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