View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10154_low_16 (Length: 253)
Name: NF10154_low_16
Description: NF10154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10154_low_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 9381070 - 9381315
Alignment:
| Q |
8 |
aggagcacagaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
9381070 |
aggaacacaaaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcacgacccttcaaaatctcacccttggga |
9381169 |
T |
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| Q |
108 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9381170 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcctgacc |
9381269 |
T |
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| Q |
208 |
caaatggcaaaatctgaaaattttgtcccctcacatcaataacccc |
253 |
Q |
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| T |
9381270 |
caaatggcaaaatctgaaaattttgtcccctcacgtcaataacccc |
9381315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 9398495 - 9398740
Alignment:
| Q |
8 |
aggagcacagaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
107 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398495 |
aggaacacaaaccaaatcatgcaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
9398594 |
T |
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| Q |
108 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacc |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
9398595 |
cccacaaaattaaaatcaaagcattgaattatggcaccaagcaaagctggaacttcttgcattgctaaagtaaccccaggacacatccttcttcctgacc |
9398694 |
T |
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| Q |
208 |
caaatggcaaaatctgaaaattttgtcccctcacatcaataacccc |
253 |
Q |
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| T |
9398695 |
caaatggcaaaatctgaaaattttgccccctcacatcaataacccc |
9398740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 23244784 - 23244654
Alignment:
| Q |
117 |
ttaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacccaaatggca |
216 |
Q |
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||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||| | |
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| T |
23244784 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggta |
23244685 |
T |
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| Q |
217 |
aaatctgaaaattttgtcccctcacatcaat |
247 |
Q |
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| T |
23244684 |
gaagttgaaaatgttgtcccctaacatcaat |
23244654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 34762524 - 34762558
Alignment:
| Q |
180 |
actccaggacacatccttcttcccgacccaaatgg |
214 |
Q |
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| T |
34762524 |
actccaggacacatccttcttccagacccaaatgg |
34762558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 34781664 - 34781630
Alignment:
| Q |
180 |
actccaggacacatccttcttcccgacccaaatgg |
214 |
Q |
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| T |
34781664 |
actccaggacacatccttcttccagacccaaatgg |
34781630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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